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  3. RAFL04-17-N22

RAFL04-17-N22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02353)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-N22 - full reading 
CCAAAGAAAA AAAATAAATT CGAAGGTAAA TATCCAGAAG CTTGATCCTC 
CTAGTTGTAC GAAAGCTTGA GTAATGGGGT CTAGATTAAA CTTCAAGAGC 
TTTGTTGATG GTGTGAGTGA GCAGCAGCCA ACGGTGGGGA CTAGTCTTCC 
ATTGACTAGG CAGAACTCTG TGTTCTCGTT AACCTTTGAT GAGTTTCAGA 
ACTCATGGGG TGGTGGAATT GGGAAAGATT TTGGGTCTAT GAACATGGAT 
GAGCTCTTGA AGAACATTTG GACTGCAGAG GAAAGTCATT CAATGATGGG 
AAACAATACC AGTTACACCA ACATCAGCAA TGGTAATAGT GGAAACACTG 
TTATTAACGG CGGTGGTAAC AACATTGGTG GGTTAGCTGT TGGTGTGGGA 
GGAGAAAGTG GTGGTTTTTT CACTGGTGGG AGTTTGCAGA GACAAGGTTC 
ACTTACCTTG CCTCGGACGA TTAGTCAGAA AAGGGTTGAT GATGTCTGGA 
AGGAGCTGAT GAAGGAGGAT GACATTGGAA ATGGTGTTGT TAATGGTGGG 
ACAAGCGGAA TTCCGCAGAG GCAACAAACG CTGGGAGAGA TGACTTTGGA 
GGAGTTTTTG GTCAGGGCTG GTGTGGTTAG GGAAGAACCT CAACCGGTGG 
AGAGTGTAAC TAACTTCAAT GGCGGATTCT ATGGATTTGG CAGTAATGGA 
GGTCTTGGGA CAGCTAGTAA TGGGTTTGTT GCAAACCAAC CTCAAGATTT 
GTCAGGAAAT GGAGTAGCGG TGAGACAGGA TCTGCTGACT GCTCAAACTC 
AGCCACTACA GATGCAGCAG CCACAGATGG TGCAGCAGCC ACAGATGGTG 
CAGCAGCCGC AACAACTGAT ACAGACGCAG GAGAGGCCTT TTCCCAAACA 
GACCACTATA GCATTTTCCA ACACTGTTGA TGTGGTTAAC CGTTCTCAAC 
CTGCAACACA GTGCCAGGAA GTGAAGCCTT CAATACTTGG AATTCATAAC 
CATCCTATGA ACAACAATCT ACTGCAAGCT GTCGATTTTA AAACAGGAGT 
AACGGTTGCA GCAGTATCTC CTGGAAGCCA GATGTCACCT GATCTGACTC 
CAAAGAGCGC CCTGGATGCA TCTTTGTCCC CTGTTCCTTA CATGTTTGGG 
CGAGTGAGAA AAACAGGTGC AGTTCTGGAG AAAGTGATTG AGAGAAGGCA 
AAAAAGGATG ATAAAGAATA GGGAATCAGC TGCAAGATCC CGCGCTCGCA 
AGCAAGCTTA TACGATGGAA CTGGAAGCAG AAATTGCGCA ACTCAAAGAA 
TTGAATGAAG AGTTGCAGAA GAAACAAGTT GAAATCATGG AAAAGCAGAA 
AAATCAGCTT CTGGAGCCTC TGCGCCAGCC ATGGGGAATG GGATGCAAAA 
GGCAATGCTT GCGAAGGACA TTGACGGGTC CCTGGTAGAG CTTATAATGG 
CGTCTAAGGA ACCCAACAAA GCGCCGAAGT TATAGAACAA CTCAGAAGAT 
AGAAAGCTAG CTTTGTACGT AGTTTAGGCA GGTTCTGTGG GTGATTGTAA 
ATCTTGAAGT GTGGCGGATT TGACAGAGAT AGATAAACAC ATATCTGTTC 
TATTTTCCTA AATCTTTTGG TTTTATCTTC CTGATGTAAT GGATCTTTAT 
CATTTGTCTT GAACATCTTT GTGACTTAAC CAGAGTGAAT TTATCTT

Gene models with high sequence identity

  1. AT4G34000.2 [+] show detail - abscisic acid responsive elements-binding factor 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam bZIP transcription factor, bZIP-1 1e-11
ProfileScan Basic-leucine zipper (bZIP) transcription factor 10.473
HMMPanther CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF 8.3e-08
HMMPanther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 8.3e-08
Coil coiled-coil 0
PatternScan Basic-leucine zipper (bZIP) transcription factor 0
HMMSmart Basic-leucine zipper (bZIP) transcription factor 9.4e-14

See the detailed result >

AT4G34000.2

Model type
Protein coding
Short Description
abscisic acid responsive elements-binding factor 3
Curator Summary
Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.
Computational Description
abscisic acid responsive elements-binding factor 3 (ABF3); FUNCTIONS IN: protein binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABRE binding factor 4 (TAIR:AT3G19290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-N22 introduced

  • F09035 - Specific phenotypes were NOT observed.
  • F11719 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found