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  3. RAFL04-18-B15

RAFL04-18-B15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00666)

full reading [+] show sequence

Nucleotide sequence: RAFL04-18-B15 - full reading 
CTTCTTAAGT TTGGTCTGAA AATCAGATCG AGATGCGTTC GTTAAAGTTA 
CTCCTTTGTT GGATCTCGTT TCTTACGTTA TCAATCTCAA TCTCTGCATC 
GTCAGATGAT CAATTCACCC TCGACGGAAC AGTTTTAGAA CTCACCGATT 
CGAATTTCGA CTCGGCGATT TCAACTTTCG ATTGCATCTT TGTTGATTTC 
TATGCTCCTT GGTGTGGTCA CTGCAAGCGT CTCAATCCCG AGTTAGACGC 
AGCTGCTCCA ATTCTTGCTA AATTGAAGCA GCCTATTGTG ATTGCAAAGC 
TGAATGCTGA TAAGTATTCT CGTCTCGCTC GGAAGATTGA GATTGATGCA 
TTTCCGACTC TCATGCTTTA TAACCATGGA GTTCCAATGG AGTACTATGG 
ACCAAGGAAA GCAGATTTGC TTGTGCGTTA CTTGAAGAAG TTTGTTGCTC 
CAGATGTTGC GGTTCTTGAG TCAGACTCAA CTGTCAAGGA GTTTGTTGAA 
GATGCTGGGA CATTCTTCCC TGTGTTTATC GGGTTTGGTT TGAACGAATC 
GATAATATCA GGATTAGGTC GGAAGTATAA GAAGAAGGCA TGGTTTGCTG 
TTTCAAAGGA AGTTTCAGAG GATACTATGG TTTCTTATGA TTTTGATAAG 
GCTCCTGCAT TAGTTGCCAA TCATCCAACT TACAATGAGC ATAGCGTGTT 
TTACGGGCCA TTCGAAGATG GATTCTTGGA GGAATTTGTG AAACAGAGTT 
TTCTTCCTTT GATTCTACCT ATTAACCATG ACACATTGAA GTTGTTGAAG 
GACGATGAGA GAAAGATTGT CTTGACGATC GTGGAAGATG AAACACACGA 
AAGCTTGGAG AAACTATACA AAGCATTGAG AGCAGCTGCT CATGCGAACC 
GCGACCTCGT TTTTGGCTAC GTCGGTGTGA AGCAGTTTGA AGAGTTTGTT 
GACTCGTTTC ATGTAGACAA GAAGACAAAT CTGCCTAAGA TTGTTGTGTG 
GGATGGAGAT GAAGAGTATG ATCAGGTGAC GGGTATAGAG ACCATAACCC 
AAGAGGAAGA TCATTTGACC CAAGTGTCTC GGTTTCTAGA GGGCTATAGA 
GAAGGAAGAA CAGAGAAGAA GAAAATCAAC GGACCATCGT TCATGGGATT 
TATCAACTCA ATGATTGGGA TTAGGTCAGT GTACATCCTT GTGTTCTTGG 
TTGCGGTCAT TATGATGCTA CGGAGCCTCG GTCAAGTTGA GGAGCCTACT 
GGAGTCCGGA CCGCCACAGC AGTCCGTGAA AGAGTTGATC AGGCCACTAC 
TGTCCCTGAA GATGAAAGCA GTGAGCATAA GCCTAGTGAC AAAAAAGAGG 
ACTAGTTTTG TTACACTTGA ATGTGGTATG TTTTTTTTCT TCTTTTATAC 
TTGAAGCTAA CTTATATAGT TCATGCTTAT TTATCTTCTT TATGGTTAGT 
CTTTTTGGGT TTTAAACGGA TGGTTGTTCC ATTTTATTTA TGAATCATT

Gene models with high sequence identity

  1. AT1G35620.1 [+] show detail - PDI-like 5-2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Thioredoxin-like subdomain 8.5e-06
FPrintScan Thioredoxin-like subdomain 8.5e-06
FPrintScan Thioredoxin-like subdomain 8.5e-06
HMMPanther PROTEIN DISULFIDE ISOMERASE 1e-48
ProfileScan Thioredoxin-like 13.369
superfamily Thioredoxin-like fold 5.8e-29
superfamily Thioredoxin-like fold 4.8e-06
HMMPfam Thioredoxin domain 1.5e-24
Gene3D Thioredoxin fold 3.7e-29
PatternScan Thioredoxin, conserved site 0

See the detailed result >

AT1G35620.1

Model type
Protein coding
Short Description
PDI-like 5-2
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
Computational Description
PDI-like 5-2 (PDIL5-2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: PDI-like 1-1 (TAIR:AT1G21750.2); Has 16921 Blast hits to 14897 proteins in 2775 species: Archae - 169; Bacteria - 7975; Metazoa - 3273; Fungi - 1120; Plants - 1363; Viruses - 4; Other Eukaryotes - 3017 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-18-B15 introduced

  • F19150 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found