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  3. RAFL04-18-D10

RAFL04-18-D10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02355)

full reading [+] show sequence

Nucleotide sequence: RAFL04-18-D10 - full reading 
GAGCCACCAT CGTCCTCTTC TCTTCCTCTT CGATCTCTCC TGAATCCTCA 
AACCCTGGAG AGAGAGAGAG AGAGTGACGG GGGAAGAAGA TGACTTCTGC 
TTTGTATGCT TCCGATTTGT TTAAGCAGCT CAAGTCAATT ATGGGGACAG 
ATTCGTTATC CGACGATGTT GTACTTGTGA TTGCAACGAC GTCTTTGGCA 
CTAGTAGCTG GATTTGTGGT GTTGTTATGG AAGAAAACGA CGGCGGATCG 
GAGCGGGGAG CTGAAGCCTT TGATGATCCC TAAGTCTCTT ATGGCTAAGG 
ACGAGGATGA TGATTTGGAT TTGGGATCCG GGAAGACTAG AGTCTCTATC 
TTCTTCGGTA CGCAGACTGG AACAGCTGAG GGATTTGCTA AGGCATTATC 
CGAAGAAATC AAAGCGAGAT ATGAAAAAGC AGCAGTCAAA GTCATTGACT 
TGGATGACTA TGCTGCCGAT GATGACCAGT ATGAAGAGAA ATTGAAGAAG 
GAAACTTTGG CATTTTTCTG TGTTGCTACT TATGGAGATG GAGAGCCTAC 
TGACAATGCT GCCAGATTTT ACAAATGGTT TACGGAGGAA AATGAACGGG 
ATATAAAGCT TCAACAACTA GCATATGGTG TGTTTGCTCT TGGTAATCGC 
CAATATGAAC ATTTTAATAA GATCGGGATA GTTCTTGATG AAGAGTTATG 
TAAGAAAGGT GCAAAGCGTC TTATTGAAGT CGGTCTAGGA GATGATGATC 
AGAGCATTGA GGATGATTTT AATGCCTGGA AAGAATCACT ATGGTCTGAG 
CTAGACAAGC TCCTCAAAGA CGAGGATGAT AAAAGTGTGG CAACTCCTTA 
TACAGCTGTT ATTCCTGAAT ACCGGGTGGT GACTCATGAT CCTCGGTTTA 
CAACTCAAAA ATCAATGGAA TCAAATGTGG CCAATGGAAA TACTACTATT 
GACATTCATC ATCCCTGCAG AGTTGATGTT GCTGTGCAGA AGGAGCTTCA 
CACACATGAA TCTGATCGGT CTTGCATTCA TCTCGAGTTC GACATATCCA 
GGACGGGTAT TACATATGAA ACAGGTGACC ATGTAGGTGT ATATGCTGAA 
AATCATGTTG AAATAGTTGA AGAAGCTGGA AAATTGCTTG GCCACTCTTT 
AGATTTAGTA TTTTCCATAC ATGCTGACAA GGAAGATGGC TCCCCATTGG 
AAAGCGCAGT GCCGCCTCCT TTCCCTGGTC CATGCACACT TGGGACTGGT 
TTGGCAAGAT ACGCAGACCT TTTGAACCCT CCTCGAAAGT CTGCGTTAGT 
TGCCTTGGCG GCCTATGCCA CTGAACCAAG TGAAGCCGAG AAACTTAAGC 
ACCTGACATC ACCTGATGGA AAGGATGAGT ACTCACAATG GATTGTTGCA 
AGTCAGAGAA GTCTTTTAGA GGTGATGGCT GCTTTTCCAT CTGCAAAACC 
CCCACTAGGT GTATTTTTTG CTGCAATAGC TCCTCGTCTA CAACCTCGTT 
ACTACTCCAT CTCATCCTCG CCAAGATTGG CGCCAAGTAG AGTTCATGTT 
ACATCCGCAC TAGTATATGG TCCAACTCCT ACTGGTAGAA TCCACAAGGG 
TGTGTGTTCT ACGTGGATGA AGAATGCAGT TCCTGCGGAG AAAAGTCATG 
AATGTAGTGG AGCCCCAATC TTTATTCGAG CATCTAATTT CAAGTTACCA 
TCCAACCCTT CAACTCCAAT CGTTATGGTG GGACCTGGGA CTGGGCTGGC 
ACCTTTTAGA GGTTTTCTGC AGGAAAGGAT GGCACTAAAA GAAGATGGAG 
AAGAACTAGG TTCATCTTTG CTCTTCTTTG GGTGTAGAAA TCGACAGATG 
GACTTTATAT ACGAGGATGA GCTCAATAAT TTTGTTGATC AAGGCGTAAT 
ATCTGAGCTC ATCATGGCAT TCTCCCGTGA AGGAGCTCAG AAGGAGTATG 
TTCAACATAA GATGATGGAG AAGGCAGCAC AAGTTTGGGA TCTAATAAAG 
GAAGAAGGAT ATCTCTATGT ATGCGGTGAT GCTAAGGGCA TGGCGAGGGA 
CGTCCACCGA ACTCTACACA CCATTGTTCA GGAGCAGGAA GGTGTGAGTT 
CGTCAGAGGC AGAGGCTATA GTTAAGAAAC TTCAAACCGA AGGAAGATAC 
CTCAGAGATG TCTGGTGATT GATGATATGA TTTATTGGTA ATTCTCTTCT 
GCTTTCTCAA CTTTTCTTGG TACGCTGTCC TTACCATTTA GATATTTATT 
TGTTTATTTT CCTTCGTCTC CCTTCTTTTA GTCAAACATG AATGATTTGT 
CAAAGTTTTC TTTGTATGAA CAAAAGTATA AACTACAAAC

Gene models with high sequence identity

  1. AT4G24520.1 [+] show detail - P450 reductase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam FAD-binding, type 1 8.6e-77
HMMPfam Flavodoxin/nitric oxide synthase 4.1e-35
HMMPfam Oxidoreductase FAD/NAD(P)-binding 1.4e-18
Gene3D no description 1.9e-40
Gene3D no description 1.4e-38
Gene3D no description 4.2e-58
superfamily Riboflavin synthase-like beta-barrel 3e-79
superfamily Ferredoxin reductase-like, C-terminal NADP-li 1.8e-52
superfamily Flavoproteins 7.3e-43
HMMPanther NADPH Cytochrome P450 Reductase 0
HMMPanther FLAVODOXIN-RELATED 0
ProfileScan Flavodoxin/nitric oxide synthase 31.695
ProfileScan Ferredoxin reductase-type FAD-binding domain 12.549
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
FPrintScan Flavodoxin-like 3.5e-20
FPrintScan Flavodoxin-like 3.5e-20
FPrintScan Flavodoxin-like 3.5e-20
FPrintScan Flavodoxin-like 3.5e-20

See the detailed result >

AT4G24520.1

Model type
Protein coding
Short Description
P450 reductase 1
Curator Summary
Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism.
Computational Description
P450 reductase 1 (ATR1); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: response to oxidative stress, phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADPH Cytochrome P450 Reductase (InterPro:IPR015702); BEST Arabidopsis thaliana protein match is: P450 reductase 2 (TAIR:AT4G30210.2); Has 6349 Blast hits to 5969 proteins in 1541 species: Archae - 6; Bacteria - 2994; Metazoa - 1048; Fungi - 898; Plants - 566; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-18-D10 introduced

  • F15920 - seed::increased size / seed::increased length
  • F19638 - Specific phenotypes were NOT observed.
  • F23825 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found