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RAFL04-18-D21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87422)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL04-18-D21 - 5 prime EST 
GATGTGGCTC TCTCTTCTCT TTCTCTTTCT CTTTCCTTTT TCTCTTTCGA 
TCAACAAAAC CACATCTCTG AACTTGAACC AATTTCTCTT CTCCCCCTTC 
CGGTTATCGG ATTACCAGAT CTCGTTTCCC GCGATCTAGT TTATTCTTTG 
AAAAAGTGAT AGAAGCAGAA ATGGGAAGGG GCAAGATCGC GATTAAGAGG 
ATCAATAACT CTACGAGCCG TCAGGTTACG TTCTCGAAGC GAAGGAATGG 
ATTGTTGAAG AAAGCTAAGG AGCTTGCGAT TCTCTGCGAT GCTGAGGTTG 
GTGTCATCAT CTTCTCCAGC ACCGGTAGGC TCTACGATTT CTCCAGCTCC 
AGCATGAAAT CGGTCATAGA GAGATACAGC GATGCCAAAG GAGAAACCAG 
TTCAGAAAAT GATCCCGCTT CAGAAATTCA GTTCTGGCAA AAGGAGGCTG 
CGATTCTAAA GCGTCAGCTA CATAACTTGC AAGAAAACCA CCGGCAAATG 
ATGGGGGAGG AGCTCTCTGG ACTAAGTGTA GAAGCTTTAC AGAATTTGGA 
AAATCAGCTT GAATTGAGCC TTCGTGGCGT TCGANTGAAA AAGGTTTTGA 
TGCTGTGACA AATAAGTCAA ATTTTGGAAC CATTAGAAGA AGTAATGGAT 
GTACTCTATC TACGCTCTTC TTTG

Gene models with high sequence identity

  1. AT3G57230.1 [+] show detail - AGAMOUS-like 16
    E-value: 0; Score: 99.66

3 prime EST [+] show sequence

Nucleotide sequence: RAFL04-18-D21 - 3 prime EST 
GGTCATGTTT ATGTTTTTAT TTTCGCTTAT GCAGAGGCAA GCTGACACAG 
TGAATTGTGA TATGATTCCG ACGAGGTCAA CATAAGTGTG TTGGCACACC 
GAATTATATT ATGCAATGAA GGAAAAATAG TTGAGTTGGA TAGCTTTTGA 
ATGCGTCTCA TGATCATGCC TGCGGTTGGC CTGAGCTGAA GATGGACATG 
TTCGTTCGAG GTATCTCTCA TGTCTAGACC ATTTGTGAGA AGAGAATTCT 
TGTTTGCGAT TTTCACACCC TCGACCTCTG AAACCTTTTC ATGTAGTTCC 
ATGTTCTGTT GGTGCATTAG GTTTACTTTC TTGTGGAGGT CTAAATTCTC 
TTGGTGAACG AGATTCCCCT CTCGGTTAAG TACTTGTATT TCTTCGATTA 
ACATTTGATC CTGCAAAAGG CAAAGAAGAG CGTAGATAGA GTACATCCAT 
TACTTCTTCT AAATGGTTCC AAAATTTGAC TTATTTGTCA CAGCATCAAA 
ACCTTTTTCA TTC

Gene models with high sequence identity

  1. AT3G57230.2 [+] show detail - AGAMOUS-like 16
    E-value: 0; Score: 99.51

AT3G57230.1

Model type
Protein coding
Short Description
AGAMOUS-like 16
Curator Summary
MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.
Computational Description
AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7328 Blast hits to 7327 proteins in 923 species: Archae - 0; Bacteria - 10; Metazoa - 652; Fungi - 320; Plants - 6229; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57230.2

Model type
Protein coding
Short Description
AGAMOUS-like 16
Curator Summary
MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.
Computational Description
AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7191 Blast hits to 7190 proteins in 917 species: Archae - 0; Bacteria - 14; Metazoa - 643; Fungi - 316; Plants - 6129; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-18-D21 introduced

  • F09132 - seed::increased length

Mutant lines with disrupted or induced

8 mutant lines found