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  3. RAFL04-18-N22

RAFL04-18-N22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02362)

full reading [+] show sequence

Nucleotide sequence: RAFL04-18-N22 - full reading 
TCTCTCTCTC TCAGACGAGA TTTCCTCTTC ATCTCAAGAG AAATGGCTGA 
ATCCAAGGTA GTGGTTCCAG AGTCTGTGCT AAAGAAGATC AAGAGGCAAG 
AGGAATGGGC ATTGGCCAAG AAAGATGAAG CTGTAGCTGC TAAGAAGAAG 
AGTGTTGAGG CCCGCAAGCT TATCTTCAAG AGAGCTGAGC AGTATGCCAA 
AGAATACGCT GAGAAGGATA ACGAGTTGAT CCGATTGAAG CGGGAGGCTA 
AGTTGAAAGG AGGTTTCTAC GTTGACCCTG AGGCTAAGTT GCTCTTTATC 
ATTCGTATCC GTGGTATCAA TGCCATTGAC CCAAAAACCA AGAAGATTCT 
GCAGCTCCTG CGTTTGAGAC AGATCTTCAA TGGTGTGTTT CTTAAGGTGA 
ACAAGGCAAC AGTAAACATG CTGCGCCGAG TTGAACCATA CGTGACTTAC 
GGATACCCAA ACTTGAAGAG CGTTAAGGAA CTGATCTACA AAAGAGGTTA 
TGGAAAGCTG AACCACCAGA GGATAGCACT TACTGACAAC TCCATTGTGG 
ATCAGGCTCT CGGAAAGCAT GGGATCATCT GCGTTGAGGA TCTCATCCAC 
GAGATCATGA CTGTTGGACC TCACTTCAAG GAAGCCAACA ACTTCCTGTG 
GCCATTCCAA TTGAAGGCAC CACTCGGTGG CCTTAAGAAG AAGAGAAACC 
ACTACGTCGA AGGTGGTGAT GCTGGAAACA GGGAGAATTT CATCAACGAG 
CTTGTCAGGA GAATGAATTG ATGAAAGCTT CCTTCTTTAT CTTTGCAAAT 
TTCAAAGATT TTGGGACCGA GTTTTTTTTT TTTTGTTCAA GTTATCAGAG 
ACTTGTGATC TTTTATCCGA GATAGGCTTT TTATGACT

Gene models with high sequence identity

  1. AT2G44120.1 [+] show detail - Ribosomal protein L30/L7 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein L30, conserved site 0
superfamily Ribosomal protein L30, ferredoxin-like fold domain 1.8e-64
Gene3D no description 9.9e-27
HMMTigr Ribosomal protein L7, eukaryotic 1.3e-138
Coil coiled-coil 0
HMMPfam Ribosomal protein L30, N-terminal 3.6e-24
HMMPfam Ribosomal protein L30p/L7e, conserved region 4.4e-21
HMMPanther 60S RIBOSOMAL PROTEIN L7 5.2e-130

See the detailed result >

AT2G44120.1

Model type
Protein coding
Short Description
Ribosomal protein L30/L7 family protein
Computational Description
Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 1303 Blast hits to 1301 proteins in 392 species: Archae - 217; Bacteria - 1; Metazoa - 455; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-18-N22 introduced

  • F28204 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found