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  3. RAFL04-19-C23

RAFL04-19-C23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09260)

full reading [+] show sequence

Nucleotide sequence: RAFL04-19-C23 - full reading 
CTCTCTACTC GCCAAGAAGT TTCCTTTCCT TTGATTGCAC AACTAATCTC 
AAACTAAAAG ATCTTCTCTT TAGGCATACC CAGATCTTTC TCTCTCTAAA 
GTCTCCACCT TTCACGGTTT TTTGCTTCTC ACCTGAATCC AATCAATCTC 
GCCGGAGTGA ATTCACCTTC CTCCGGTTGA CTCGTCGGAC TTAGTCCGAC 
CTTTCAATTC GTAGATTCTG TTTACAATTC ACTGATCGTT TGATTAGAAA 
TGGGTTACTT GTTCTTCTAA GTCTCTCTTT AGCTGAAAGT TTGTTGCTTT 
ACGACTCTTC GATTTACCCT TACTTGTTCA AGTTCTTCAT CAAATTCGTA 
GTTATGGCGA TAAGAATCAC TTTCACTTAC TCCACCCATG TTGCTCGGAA 
TCTCGTCGGG ACCCGTGTTG GTCCCGGTGG TTACTGCTTT GAATCCTTGG 
TTCGTCCTAG ATTCTTCTCC CACAAGCGTG ATTTCGATAG ATCTCCTCGG 
AATCGACCTG CATCGATGTA TGGTAGCATC GCGAGGGAGC TCATCGGAGA 
AGGAAGTCAA AGCCCGCTTG TGATGGGTTT GATCTCGATA TTGAAGTCAA 
CGACGGGTCA TGAGTCGTCA ACGATGAATG TTCTGGGGGT TTCATCTTTC 
AAGGCTTCTT CTATTATTCC GTTTCTTCAA GGGTCGAAAT GGATTAAGAA 
TCCACCGGTG ATTGATGACG TGGATAAAGG AGGAACAGTT TGTGATGATG 
ATGATGATAA GGAATCGAGG AATGGAGGAA GTGGATGGGT TAATAAGCTT 
TTGAGTGTTT GTTCTGAGGA TGCTAAGGCT GCTTTCACGG CGGTTACTGT 
TTCTATCCTT TTTAGATCAG CTCTTGCGGA GCCAAAGTCG ATTCCTTCAA 
CGTCTATGTA CCCTACCTTG GACAAGGGTG ATCGCGTTAT GGCGGAGAAG 
GTCTCATACT TTTTCAGGAA GCCAGAGGTT TCAGATATAG TAATCTTCAA 
GGCTCCTCCA ATTTTGCTGG AATATCCGGA ATATGGCTAC AGTTCCAATG 
ATGTATTCAT AAAAAGGATA GTGGCAAGTG AAGGTGACTG GGTTGAAGTT 
CGTGATGGGA AGCTCTTTGT GAATGACATT GTGCAAGAAG AAGATTTTGT 
CTTAGAACCA ATGTCATATG AAATGGAACC AATGTTTGTC CCCAAAGGTT 
ATGTCTTTGT CCTTGGTGAT AACCGCAACA AAAGCTTTGA CTCTCATAAC 
TGGGGTCCAC TTCCAATAGA GAACATCGTT GGAAGATCTG TGTTCCGGTA 
CTGGCCACCG AGCAAAGTAT CAGACACCAT ATACCACGAC CAAGCTATCA 
CAAGGGGACC TGTTGCAGTT TCATGACAAA AGAAAGTTGG ATTTTTCTTA 
GGATTAAAGC ACAAGATTGT GCAAAACCAG TCTGGTCAGA ATTGGGTAGA 
CTTGGAATTG AAACTCAAAA CCGTTATGAT ATCTGCAGAT ACATACTGTA 
TCATCGTTAT GGATCGCATC TGGTTCTTAG CTGATGGTCG GGAAGCCGGA 
GATGTTACGT GTACAAAAGG AATGGAAGAT GCAAAGAAAA GGAAACGATT 
TACTGTGATT GTTATGTGTG AAAACCCTGG ACAAGATACT GTAGTAAAGC 
CATAAAGGCA ACTGTTAAAC AAAAGTGTGA TTTTTTGTTG TTATGAGTTT 
GTACTATAGA ATCGTGTAAA ACCTCCTTTG TGTTGTTGTA TGTAAATTGG 
GATATTGTTA T

Gene models with high sequence identity

  1. AT2G30440.1 [+] show detail - thylakoid processing peptide
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SIGNAL PEPTIDASE I 2.4e-61
HMMPanther PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBR 2.4e-61
FPrintScan Peptidase S26A, signal peptidase I 2.2e-16
FPrintScan Peptidase S26A, signal peptidase I 2.2e-16
FPrintScan Peptidase S26A, signal peptidase I 2.2e-16
Gene3D Peptidase S24/S26A/S26B/S26C, beta-ribbon domain 8.7e-35
HMMPfam Peptidase S26, conserved region 0.0000000000053
PatternScan Peptidase S26A, signal peptidase I, serine active site 0
PatternScan Peptidase S26A, signal peptidase I, conserved site 0
superfamily Peptidase S24/S26A/S26B/S26C 2.1e-46
HMMTigr Peptidase S26A, signal peptidase I 8.5e-44

See the detailed result >

AT2G30440.1

Model type
Protein coding
Short Description
thylakoid processing peptide
Curator Summary
Encodes a thylakoidal processing peptidase that removes signal sequences from proteins synthesized in the cytoplasm and transported into the thylakoid lumen.
Computational Description
thylakoid processing peptide (TPP); CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G06870.1); Has 9797 Blast hits to 9593 proteins in 2427 species: Archae - 0; Bacteria - 7318; Metazoa - 215; Fungi - 115; Plants - 235; Viruses - 0; Other Eukaryotes - 1914 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-19-C23 introduced

  • F06442 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / whole plant::decreased height / sporophyte vegetative stage::decreased speed / fruit::increased length / fruit::increased thickness / stem::present in fewer numbers in organism
  • F21337 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found