1. Home
  2. Full-length cDNAs
  3. RAFL04-19-H23

RAFL04-19-H23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87428)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL04-19-H23 - 5 prime EST 
GATCTAGAAT CTTCCCTCAA CCTCTAGAAA ACAACTTTCG TATCCTTCAA 
AAACCCTAAA CCCTAGCTTT TGCACAGACG CAATTTCATC GCATCATTTT 
GCAATTTTCC TTTACTGATC TGTCACCACC TCTTGAATTT CGAAACCATG 
GCTACCGCAG CTCTCCTCCG CTCTATTCGA CGCCGTGAAG TCGTTTCCTC 
TCCTTTCTCA GCTTACAGAT GCCTTTCAAG CAGTGGGAAA GCATCATTGA 
ACAGTTCCTA TCTGGGTCAG AATTTTAGAA GCTTTTCCAG AGCCTTTAGC 
TCGAAGCCTG CTGGAAACGA TGTCATTGGT ATTGATTTGG GTACTACTAA 
TTCATGTGTT GCCGTCATGG AGGGGAAGAA TCCGAAAGTC ATTGAAAATG 
CTGAAGGTGC TCGAACCACT CCATCAGTTG TAGCATTCAA CACGAAAGGA 
GAACTTCTTG TGGGTACACC AGCCAAGCGA CAAGCTGTCA CTAATCCTAC 
AAACACAGTA TCTGGAACGA AACGTTTGAT TGGGAGAAAG TTCGACGATC 
CACAAACTCA GAAAGAAATG AAGATGGTGC CTTACAAGAT TGGGCGTGCA 
CCTAATGGCG ATGCGTGGGT TGAAGCCAAT GGTCAGCAGT ATTCTCCTAG 
TCAGATTGGA GCGTTTATCT TG

Gene models with high sequence identity

  1. AT5G09590.1 [+] show detail - mitochondrial HSO70 2
    E-value: 0; Score: 99.85

3 prime EST [+] show sequence

Nucleotide sequence: RAFL04-19-H23 - 3 prime EST 
GAAAACTTCT TCTCTTTAAC CATCACATTA CATAACAAAG GTTTTTTAGC 
AGAGAAACAT TAAGTTTAGT TCCCTGACAA AAGCTTATTC CAGAAACATA 
TCCACTGCTC GTTGTTCTAA AAGGCAAAAG TTCCTTGGAC ATAGAACCCA 
CCATGATCTA AACCTAATCT CTTAAAACCC AAGTGGCAAG AATTTACCAA 
ATCTCCTCAC TTTTTCACTT CCTCGTACTC TGCTTCTGGA GCTTGATCAC 
TGCCTCCCTC AGATCCTCCT CCTGGTGCAG AGCCTCCACC AGAACCACCA 
GACATGTGCT CCCCAATCTT AGAAACAGCT TTGTTTGCCG CCTCAATCTT 
GGCCTTGATC TCGTTGAGAT CATCCCCAGA GGAAGCGCTC CTTAGATCTG 
CCACAGCATC TTCAATCTCC TTGGCGATTT CACTTGGGAT CTTCTCTCTG 
TATTCACCAA GACTCTTCTC TATGCTGTAA ATTGTTGTGT CAGCTGTGTT 
CTTGGTGTCG ATCAATTCTT TTCTTTCTTT GTCTTTCTGA GCATGCAACT 
CTGCTTCTCT CACCATCTTC TGGATATCAT CCTCTGAGAG CCCACCAGAG 
GATCGGATTG

Gene models with high sequence identity

  1. AT5G09590.1 [+] show detail - mitochondrial HSO70 2
    E-value: 0; Score: 100.00

AT5G09590.1

Model type
Protein coding
Short Description
mitochondrial HSO70 2
Curator Summary
heat shock protein 70 (Hsc70-5); nuclear
Computational Description
mitochondrial HSO70 2 (MTHSC70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to virus, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: mitochondrial heat shock protein 70-1 (TAIR:AT4G37910.1); Has 35090 Blast hits to 34955 proteins in 4871 species: Archae - 160; Bacteria - 17405; Metazoa - 3531; Fungi - 1665; Plants - 1246; Viruses - 305; Other Eukaryotes - 10778 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-19-H23 introduced

  • F13119 - rosette leaf::decreased size / rosette leaf::increased width / stem::decreased thickness / cauline leaf::epinastic / whole plant::decreased height / stem::abnormal / stem internode::decreased length / fruit::abnormal / rosette leaf::epinastic / stem::abnormal / stem internode::decreased length / fruit::abnormal

Mutant lines with disrupted or induced

6 mutant lines found