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  3. RAFL04-19-J16

RAFL04-19-J16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00663)

full reading [+] show sequence

Nucleotide sequence: RAFL04-19-J16 - full reading 
AAACGTCGCG ACGGAGAGAG AGCGAGAGAG ACGATGGAGG AAGAGGAGCA 
CGAGGTTTAC GGTGGTGAAA TTCCAGACGT CGGAGAGATG GATGGAGATA 
TGGAGGCTCT CAACCCCGAT TTGGATATGG CTGCTGCTGA TGATGATGCG 
GTTAAGGAGT TGGATGAAAT GAAGAAACGA TTGAAAGAGA TGGAGGACGA 
AGCTGCTGCT CTGCGTGAGA TGCAGGCTAA GGTCGAGAAG GAAATGGGAG 
CTCAAGATCC TGCTAGTATT GCAGCGAATC AAGCAGGCAA GGAGGAGGTT 
GATGCTCGAT CAGTTTTTGT TGGCAATGTT GATTACGCTT GCACACCTGA 
AGAAGTTCAG CAGCATTTCC AAACATGCGG CACTGTCCAT CGGGTGACCA 
TTCTGACAGA CAAATTCGGG CAGCCAAAGG GATTTGCATA TGTAGAATTC 
GTCGAAGTGG AAGCTGTTCA AGAGGCTCTA CAACTGAATG AATCAGAGCT 
ACATGGTCGT CAATTAAAGG TCTTGCAGAA GAGAACAAAC GTTCCTGGAT 
TGAAACAGTT CCGTGGTAGA CGATTCAATC CATACATGGG TTACCGGTTC 
CGCAGACCTT TCATGTCTCC TTATATGTAT TCCCCATATG GATACGGAAA 
AGCTCCTAGG TTTAGAAGGC CTATGCGTTA CATGCCGTAC CAATAAAACC 
GTCATCATGG TTAAGCATAG AAGGGATTCG CTACCAGTGT GGATGCGTGT 
ATTGGCTATA CCCATCCTTC ATTGAGCTTT CTTTATGACT TTGGCTCTTT 
CGCCTTTTAG AACTTTGCGC GTAAACATTT TCGAACCTAG ACTGGTATTA 
TAAGTTTCAT ATCGTTTTGA TATGATGCAT ATAATGATTG GATCAAGTGT 
TGCTTATATA ATTGGGACTA TTGGGTTAT

Gene models with high sequence identity

  1. AT5G65260.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart RNA recognition motif, RNP-1 8.1e-21
HMMPfam RNA recognition motif, RNP-1 4.1e-18
HMMPfam Paraquat-inducible protein A 0.000084
Coil coiled-coil 0
ProfileScan RNA recognition motif, RNP-1 16.978
superfamily RNA-binding domain, RBD 2e-25
Gene3D Nucleotide-binding, alpha-beta plait 2e-21
HMMPanther POLY-A BINDING PROTEIN 2 9.4e-28

See the detailed result >

AT5G65260.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-19-J16 introduced

  • F02101 - Specific phenotypes were NOT observed.
  • F17123 - Specific phenotypes were NOT observed.
  • F22816 - Specific phenotypes were NOT observed.
  • F30543 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found