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Full-length cDNAs
RAFL04-19-K24

RAFL04-19-K24

RIKEN Arabidopsis Full-length cDNAs

ACTTATCTCC GGTAACGGAC AACCACTCGT TTCCCGAAAC AGCAACTCAC 
AGACTCACAC CACTCCAGTC TCCGGCTTAA CTACCACCAG AGACGATTCT 
CTCTTCCGTC GGTTCTATGA CTTCGATTCT CAACACTGTC TCCACCATCC 
ACTCTTCCAG AGTTACCTCC GTCGATCGAG TCGGAGTCCT CTCTCTTCGG 
AATTCGGATT CCGTTGAGTT CACTCGCCGG CGTTCTGGTT TCTCGACGTT 
GATCTACGAA TCACCCGGGC GGAGATTTGT TGTGCGTGCG GCGGAGACTG 
ATACTGATAA AGTTAAATCT CAGACACCTG ACAAGGCACC AGCCGGTGGT 
TCAAGCATTA ACCAGCTTCT CGGTATCAAA GGAGCATCTC AAGAAACTAA 
TAAATGGAAG ATTCGTCTTC AGCTTACAAA ACCAGTCACT TGGCCTCCAC 
TGGTTTGGGG AGTCGTCTGT GGTGCTGCTG CTTCAGGGAA CTTTCATTGG 
ACCCCAGAGG ATGTTGCTAA GTCGATTCTT TGCATGATGA TGTCTGGTCC 
TTGTCTTACT GGCTATACAC AGACAATCAA CGACTGGTAT GATAGAGATA 
TCGACGCAAT TAATGAGCCA TATCGTCCAA TTCCATCTGG AGCAATATCA 
GAGCCAGAGG TTATTACACA AGTCTGGGTG CTATTATTGG GAGGTCTTGG 
TATTGCTGGA ATATTAGATG TGTGGGCAGG GCATACCACT CCCACTGTCT 
TCTATCTTGC TTTGGGAGGA TCATTGCTAT CTTATATATA CTCTGCTCCA 
CCTCTTAAGC TAAAACAAAA TGGATGGGTT GGAAATTTTG CACTTGGAGC 
AAGCTATATT AGTTTGCCAT GGTGGGCTGG CCAAGCATTG TTTGGCACTC 
TTACGCCAGA TGTTGTTGTT CTAACACTCT TGTACAGCAT AGCTGGGTTA 
GGAATAGCCA TTGTTAACGA CTTCAAAAGT GTTGAAGGAG ATAGAGCATT 
AGGACTTCAG TCTCTCCCAG TAGCTTTTGG CACCGAAACT GCAAAATGGA 
TATGCGTTGG TGCTATAGAC ATTACTCAGC TTTCTGTTGC CGGATATCTA 
TTAGCATCTG GGAAACCTTA TTATGCGTTG GCGTTGGTTG CTTTGATCAT 
TCCTCAGATT GTGTTCCAGT TTAAATACTT TCTCAAGGAC CCTGTCAAAT 
ACGACGTCAA GTACCAGGCA AGCGCGCAGC CATTCTTGGT GCTCGGAATA 
TTTGTAACGG CATTAGCATC GCAACACTGA AAAAGGCGTA TTTTGATGGG 
GTTTTGTCGA AAGCAGAGGT GTTGACACAT CAAATGTGGG CAAGTGATGG 
CATCAACTAG TTTAAAAGAT TTTGTAAAAT GTATGTACCG TTATTACTAG 
AAACAACTCC TGTTGTATCA ATTTAGCAAA ACGGCTGAGA AATTGTAATT 
GATGTTAC

Gene models with high sequence identity

AT3G51820.1 [+] show detail - UbiA prenyltransferase family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	UbiA prenyltransferase	5.2e-42
HMMTigr	Chlorophyll synthase, ChlG	2.5e-251
HMMTigr	Bacteriochlorophyll/chlorophyll synthetase	1.5e-150
HMMPanther	BACTERIOCHLOROPHYLL SYNTHASE	1.4e-80
HMMPanther	PRENYLTRANSFERASES	1.4e-80

See the detailed result >

AT3G51820.1

Model type: Protein coding
Short Description: UbiA prenyltransferase family protein
Curator Summary: Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.
Computational Description: G4; FUNCTIONS IN: chlorophyll synthetase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bacteriochlorophyll/chlorophyll synthetase (InterPro:IPR006372), Chlorophyll synthase, ChlG (InterPro:IPR011799), UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate prenyltransferase (TAIR:AT3G11945.1); Has 2782 Blast hits to 2782 proteins in 800 species: Archae - 310; Bacteria - 1584; Metazoa - 63; Fungi - 24; Plants - 236; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL04-19-K24 introduced

F14634 - rosette leaf::desaturated green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::desaturated green / whole plant::decreased height / stem::present in fewer numbers in organism / fruit::abnormal / rosette leaf::desaturated green / rosette leaf::decreased size / fruit::abnormal
F21649 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found