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RAFL04-19-L07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00620)

full reading [+] show sequence

Nucleotide sequence: RAFL04-19-L07 - full reading 
ACAGCTAACT ATTTATTCTT AGGAGATTAC GTAGACAGGG GCAAGCAGAG 
TTTGGAGACT ATTTGTCTTC TGCTTGCTTA CAAAATCAAA TACCCTGAGA 
ACTTTTTTCT TCTAAGAGGA AACCACGAAT GTGCTTCTAT TAACAGAATC 
TATGGATTCT ATGATGAATG TAAACGTCGA TTCAGTGTGA GACTCTGGAA 
AGTGTTTACA GATTCTTTTA ACTGTCTCCC TGTTGCTGCT GTTATAGACG 
ATAAGATATT ATGTATGCAC GGTGGCCTTT CTCCCGATTT GACCAACGTG 
GAACAGATTA AGAACATTAA GCGACCTACT GATGTTCCTG ACTCTGGTTT 
GCTCTGTGAT CTGCTTTGGT CTGATCCAAG CAAAGATGTC AAAGGTTGGG 
GGATGAATGA CCGTGGAGTC TCTTACACGT TTGGCCCTGA CAAAGTCGCG 
GAGTTTCTAA TAAAGAATGA TATGGATCTC ATCTGCCGTG CCCACCAGGT 
TGTAGAGGAT GGATATGAGT TTTTCGCCGA TAGACAGCTT GTTACGATAT 
TTTCTGCTCC CAACTACTGT GGTGAATTTG ACAATGCTGG TGCTATGATG 
AGTGTTGATG AAAGTTTAAT GTGCTCTTTC CAAATTCTTA AGCCTGCTGA 
TCGAAAGCCC CGGTTCTTAT GAAGTAAAGA GTTGAAACCT CGCGGGAAAG 
AAGAGGAAAA AGGCGATACG AAAGCGGGAG AGACATTTGA AGCTCCCTGA 
GACTTTGTCC GGAGGCCTTG CAAAGGCAAA AAAACATAAT TTACATGTTA 
TATTATCTTA TTTGAACTCT TGCCATTTCT TTTCTCAAAA CACTTTATGT 
TCTTATGATC TTCTCCTCTG ACTCTATATA GACAGTAAAA AAAGTCTGCA 
AATTTTCATT CTT

Gene models with high sequence identity

  1. AT5G59160.1 [+] show detail - type one serine/threonine protein phosphatase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 3e-100
superfamily Metallo-dependent phosphatases 3.9e-104
HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-114
HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3e-172
HMMPfam Metallophosphoesterase 7e-36
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0

See the detailed result >

AT5G59160.1

Model type
Protein coding
Short Description
type one serine/threonine protein phosphatase 2
Curator Summary
Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.
Computational Description
type one serine/threonine protein phosphatase 2 (TOPP2); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 5 (TAIR:AT3G46820.1); Has 7217 Blast hits to 7021 proteins in 626 species: Archae - 78; Bacteria - 572; Metazoa - 2410; Fungi - 1415; Plants - 989; Viruses - 12; Other Eukaryotes - 1741 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-19-L07 introduced

  • F02828 - Specific phenotypes were NOT observed.
  • F28201 - rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / whole plant::increased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / root::present in greater numbers in organism
  • F28601 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found