1. Home
  2. Full-length cDNAs
  3. RAFL04-19-L23

RAFL04-19-L23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00634)

full reading [+] show sequence

Nucleotide sequence: RAFL04-19-L23 - full reading 
ATTTTTCATC GATTCGATTC CAAATCGGAA GGATGATAAC GTCGTCCCTA 
ACCTCATCTC TGCAAGCTCT CAAGCTTTCG TCTCCGTTCG CCCATGGCTC 
CACTCCTCTC TCATCTCTCT CTAAGCCCAA TTCCTTCCCG AACCACAGAA 
TGCCCGCTTT AGTTCCGGTC ATCAGAGCCA TGAAAACGAT GCAGGGGCGC 
GTGGTGTGCG CAACCAGTGA CAAGACTGTG GCGGTGGAGG TGGTGAGGCT 
GGCTCCCCAC CCCAAGTACA AGAGGCGCGT GAGGATGAAG AAGAAGTACC 
AAGCTCACGA CCCCGATAAT CAGTTCAAGG TTGGCGACGT GGTCAGACTG 
GAAAAGAGCA GACCCATCAG TAAGACTAAA TCATTTGTGG CGCTTCCTGT 
CATCGCAAGG GCCGCCAGGA AAGCCGAAGC CGGAGGAGAT GAACTCCTTG 
GCCTTCCCTT GGAGTCTCAG CAGCCGGCGT AGAGAATGAT TGCTCTTTGT 
TTCTTTTGGT AAAGCCGTCT TTTTTTTGCT CTGCTTCTGT TTGTTTGTTG 
TGTATCCCGG AACCAGTGTA ATTTATGGAA TGCTTTTGTG ATTTCATTGC 
TTATGCCATG AGTGTGTTTT CAAT

Gene models with high sequence identity

  1. AT1G79850.1 [+] show detail - ribosomal protein S17
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
BlastProDom Ribosomal protein S17 2e-27
PatternScan Ribosomal protein S17, conserved site 0
Gene3D Nucleic acid-binding, OB-fold 4.1e-24
HMMPanther 30S RIBOSOMAL PROTEIN S17 2e-74
HMMPanther Ribosomal protein S17 2e-74
superfamily Nucleic acid-binding, OB-fold-like 4.6e-26
FPrintScan Ribosomal protein S17 1.6e-09
FPrintScan Ribosomal protein S17 1.6e-09
FPrintScan Ribosomal protein S17 1.6e-09
HMMPfam Ribosomal protein S17 5.2e-29

See the detailed result >

AT1G79850.1

Model type
Protein coding
Short Description
ribosomal protein S17
Curator Summary
nuclear-encoded 30S chloroplast ribosomal protein S17
Computational Description
ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-19-L23 introduced

  • F03428 - Specific phenotypes were NOT observed.
  • F04140 - Specific phenotypes were NOT observed.
  • F04649 - seed::increased size / seed::increased length
  • F06224 - Specific phenotypes were NOT observed.
  • F07019 - Specific phenotypes were NOT observed.
  • F07323 - seed::increased size
  • F07324 - Specific phenotypes were NOT observed.
  • F08025 - Specific phenotypes were NOT observed.
  • F10240 - Specific phenotypes were NOT observed.
  • F13521 - seed::increased size / seed::increased length
  • F16225 - Specific phenotypes were NOT observed.
  • F16441 - Specific phenotypes were NOT observed.
  • F17935 - Specific phenotypes were NOT observed.
  • F19222 - Specific phenotypes were NOT observed.
  • F19824 - Specific phenotypes were NOT observed.
  • F23048 - Specific phenotypes were NOT observed.
  • F23718 - seed::increased size / seed::increased length
  • F24003 - Specific phenotypes were NOT observed.
  • F25314 - Specific phenotypes were NOT observed.
  • F26717 - Specific phenotypes were NOT observed.
  • F27943 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

34 mutant lines found