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  3. RAFL04-19-M20

RAFL04-19-M20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00581)

full reading [+] show sequence

Nucleotide sequence: RAFL04-19-M20 - full reading 
AGGGTTTTTC TCTGAGGAAG AAGCGTTTCA TTTCTCTGAA TTTCATCGAA 
AATGGCGGAA AGAGGAGGAG AAGGCGGCGC AGAGCGTGGC GGTGACCGTG 
GTGACTTCGG ACGTGGATTC GGCGGTGGAC GTGGAGGTGG CCGTGGCCGT 
GATCGTGGTC CAAGAGGCCG TGGAAGACGT GGAGGCCGTG CCTCGGAAGA 
AACGAAATGG GTTCCAGTGA CCAAACTAGG TCGTCTAGTG GCTGACAATA 
AAATAACGAA GCTAGAGCAG ATCTATCTCC ATTCTCTCCC AGTAAAGGAG 
TACCAAATCA TAGATCATCT TGTTGGTCCT ACGTTGAAAG ACGAGGTTAT 
GAAGATCATG CCTGTTCAGA AACAAACCAG AGCTGGTCAA AGGACTAGAT 
TCAAGGCCTT TGTTGTTGTT GGTGATGGTA ATGGTCATGT TGGTTTGGGT 
GTCAAGTGTT CTAAGGAAGT TGCTACTGCC ATTAGAGGAG CTATTATTCT 
TGCTAAGCTC TCTGTTGTTC CGGTGAGGAG AGGTTACTGG GGGAATAAGA 
TTGGGAAGCC ACACACTGTG CCTTGTAAGG TTACTGGGAA GTGTGGCTCT 
GTTACTGTGA GAATGGTTCC TGCTCCGAGA GGTTCTGGTA TTGTTGCTGC 
TAGGGTTCCT AAGAAGGTTC TTCAGTTCGC TGGTATTGAT GATGTCTTTA 
CTTCTTCCAG AGGATCTACT AAAACTCTTG GAAACTTTGT CAAGGCGACG 
TTTGACTGCT TACAGAAGAC ATATGGGTTC CTTACACCAG AGTTCTGGAA 
AGAGACTAGA TTCTCCAGAT CGCCCTACCA AGAGCACACT GATTTCTTGT 
CGACTAAGGC TGTTTCTGCA ACCAAGGTTA TCACGGAGGG TGAAGACCAA 
GCTTAAGACC TTCATGAGAT AAGTTTTGGT TGTTCTTAAT ACTAATTCCT 
ACTTTGAAAA AGAGTATTTT TTTTTCTTGA TTATCTATGA GTTTTGTTAT 
TGGTGGTTTC GTTACTGTTT TGGATTTTGT TAGATGTTTG CCTTAATGCA 
AATTTCAATG AAATAGCTTT T

Gene models with high sequence identity

  1. AT1G58380.1 [+] show detail - Ribosomal protein S5 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribosomal protein S5, eukaryotic/archaeal 4e-136
PatternScan Ribosomal protein S5, N-terminal, conserved site 0
HMMPfam Ribosomal protein S5, N-terminal 3.4e-29
HMMPfam Ribosomal protein S5, C-terminal 7.1e-24
superfamily Ribosomal protein S5 domain 2-type fold 1.5e-27
superfamily dsRNA-binding domain-like 2.2e-23
Gene3D Double-stranded RNA-binding-like 1.3e-21
Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 6.4e-18
HMMPanther 40S RIBOSOMAL PROTEIN S2 6.6e-166
HMMPanther Ribosomal protein S5 6.6e-166
ProfileScan Ribosomal protein S5, N-terminal 23.07

See the detailed result >

AT1G58380.1

Model type
Protein coding
Short Description
Ribosomal protein S5 family protein
Computational Description
XW6; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast, membrane; EXPRESSED IN: guard cell, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10515 Blast hits to 9714 proteins in 2923 species: Archae - 262; Bacteria - 5279; Metazoa - 1538; Fungi - 549; Plants - 325; Viruses - 26; Other Eukaryotes - 2536 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-19-M20 introduced

  • F06310 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / whole plant::decreased height / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism / stem internode::decreased length
  • F15408 - Specific phenotypes were NOT observed.
  • F26722 - Specific phenotypes were NOT observed.
  • F28540 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found