1. Home
  2. Full-length cDNAs
  3. RAFL04-19-O21

RAFL04-19-O21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17005)

full reading [+] show sequence

Nucleotide sequence: RAFL04-19-O21 - full reading
GAAGGGTGGT GTCATAAGCG TTTACTGTGA GTCTCTCAAA GAAACCAAAG 
GCAGAGAAAA GAGATAACAC ACACAAAAAA AAATGGCATC AACCTCACTC
CTCAAGGCTT CTCCGGTGTT GGACAAATCC GAATGGGTCA AGGGACAAAG
CGTTCTCTTC CGTCAGCCTT CTTCCGCTTC TGTCGTCCTC CGCAACCGTG
CCACCTCCCT CACCGTCCGT GCCGCTTCCT CCTACGCCGA TGAGCTTGTT
AAGACAGCGA AAACTATTGC GTCTCCCGGA CGTGGAATCT TGGCGATGGA
CGAGTCAAAC GCGACTTGCG GGAAACGTTT GGATTCGATA GGGCTAGAGA
ACACTGAGGC AAATCGTCAA GCTTTCCGGA CTTTGCTGGT CTCTGCACCG
GGACTCGGAC AGTACGTCTC CGGCGCAATT CTATTTGAGG AGACTCTGTA
CCAGTCTACC ACCGAAGGCA AGAAAATGGT CGACGTCCTC GTCGAGCAGA
ACATTGTCCC TGGTATCAAA GTCGACAAGG GTTTGGTGCC ACTTGTTGGA
TCCAACAATG AGTCATGGTG CCAAGGACTA GATGGTCTAT CATCTCGAAC
TGCTGCTTAC TATCAACAGG GTGCGCGTTT CGCCAAATGG CGTACTGTCG
TGAGCATTCC TAACGGTCCG TCTGCCCTCG CCGTCAAAGA AGCTGCTTGG
GGTCTTGCTC GATACGCTGC CATTTCACAG GACAGCGGTT TGGTTCCGAT
TGTTGAGCCA GAGATCTTGT TGGATGGAGA ACACGACATT GACAGAACAT
ACGACGTAGC AGAGAAGGTT TGGGCTGAGG TTTTCTTTTA CCTTGCTCAG
AACAATGTCA TGTTTGAAGG TATCCTCCTA AAACCGAGCA TGGTGACTCC
CGGAGCTGAG TCTAAAGACA GAGCTACTCC TGAACAAGTT GCCGCCTACA
CCCTCAAGCT CCTCCGCAAC AGAGTCCCTC CCGCAGTCCC CGGAATCATG
TTTTTGTCCG GAGGACAGTC GGAGGTGGAG GCAACACTCA ACTTGAACGC
AATGAACCAG GCACCAAACC CATGGCACGT GTCCTTCTCC TACGCACGTG
CGTTGCAGAA CACTTGTCTG AAAACATGGG GCGGCAGACC CGAGAACGTG
AACGCAGCTC AGACCACTCT CTTGGCCCGT GCCAAGGCCA ATTCGTTGGC
TCAGCTCGGA AAATACACCG GTGAGGGTGA GTCCGAAGAG GCTAAGGAGG
GCATGTTCGT CAAAGGGTAC ACCTATTGAA GAGATGATGC TGTGAAAAAA
GAGATGAAGC AGATGTTTTA ATCACATTTG TTTTTGAGTT TGCTTGTTAT
TAATCATGTC AAATCATTAT TTTCTCTGCT TACTTTGCGT TAGCTACTCC
TTTTAATAAG TTCTATTATA TTGAAGTTAT CTAAAAAAAA AA

Gene models with high sequence identity

  1. AT4G38970.1 [+] show detail - fructose-bisphosphate aldolase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Aldolase 8.4e-157
HMMPanther Fructose-bisphosphate aldolase, class-I 3.8e-268
HMMPfam Fructose-bisphosphate aldolase, class-I 2.1e-167
PatternScan Fructose-bisphosphate aldolase, class-I 0
Gene3D Aldolase-type TIM barrel 2.3e-142

See the detailed result >

AT4G38970.1

Model type
Protein coding
Short Description
fructose-bisphosphate aldolase 2
Curator Summary
Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Computational Description
fructose-bisphosphate aldolase 2 (FBA2); FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt, response to abscisic acid stimulus; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 1 (TAIR:AT2G21330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-19-O21 introduced

  • F03802 - Specific phenotypes were NOT observed.
  • F08225 - Specific phenotypes were NOT observed.
  • F11935 - Specific phenotypes were NOT observed.
  • F18504 - Specific phenotypes were NOT observed.
  • F18841 - Specific phenotypes were NOT observed.
  • F22829 - Specific phenotypes were NOT observed.
  • F23748 - Specific phenotypes were NOT observed.
  • F24307 - Specific phenotypes were NOT observed.
  • F26024 - Specific phenotypes were NOT observed.
  • F29105 - rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::present in fewer numbers in organism / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / stem internode::decreased length / rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::increased width / whole plant::decreased height
  • F29743 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / fruit::decreased length

Mutant lines with disrupted or induced

12 mutant lines found