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RAFL04-20-B02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00596)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-B02 - full reading 
ACAGAAACCA AACCAAGAGC CGGAAATCAA AAACAGTAAT AAAAGATCAA 
CTGCAAGAAA ATGGCTCTTC CTCTCGAGCT CGAAAGCCTC ACTGAAGCCA 
TCTCAGCTGG GATGGGAATG GGAGTTGATG AGAATGCATT GATAAGCACA 
CTGGGGAAAT CGCAAAAGGA ACATAGAAAA TTGTTTAGGA AAGCAAGCAA 
AAGTTTCTTT GTTGAAGATG AGGAAAGAGC TTTTGAGAAA TGTCATGATC 
ACTTCGTCAG ACACCTCAAG CTTGAGTTCT CCCGCTTCAA TACTGCGGTG 
GTGATGTGGG CAATGCATCC ATGGGAGAGA GATGCAAGGT TGGTGAAGAA 
AGCTTTGAAG AAAGGAGAAG AAGCTTACAA CCTCATCGTT GAGGTCTCAT 
GCACACGCTC TGCTGAGGAT CTCCTCGGTG CACGTAAAGC TTACCACTCT 
CTCTTCGACC AATCAATGGA AGAAGACATT GCCTCTCACG TCCACGGTCC 
TCAGCGCAAG TTGCTTGTGG GGCTCGTGAG TGCTTATAGA TACGAAGGAA 
ATAAGGTGAA GGATGATTCT GCCAAATCCG ATGCTAAGAT TCTAGCCGAA 
GCAGTGGCTT CTTCAGGCGA AGAAGCCGTG GAGAAGGATG AGGTTGTTAG 
GATTTTGACC ACAAGAAGCA AACTTCATCT CCAACATCTC TACAAACACT 
TTAACGAAAT CAAAGGCTCT GATCTTCTTG GGGGTGTATC TAAGTCTTCT 
CTTCTCAATG AAGCATTGAT TTGTTTGCTC AAACCGGCTC TGTATTTCAG 
CAAGATTTTG GATGCGTCTC TGAACAAAGA CGCAGACAAG ACTACCAAGA 
AATGGTTGAC AAGAGTGTTC GTTACAAGAG CAGATCATAG TGATGAGATG 
AATGAGATCA AAGAAGAGTA CAATAACCTT TATGGTGAGA CTTTGGCTCA 
AAGAATCCAA GAGAAGATAA AAGGGAACTA CAGAGATTTC TTGCTCACAC 
TTCTCTCCAA ATCCGATTGA TTTCGTGTTG AGAAACCTAT TACCAATACT 
TTTGGTTATT GAAGATTTAT GATTTCCCTT TTTATGGTTT TATGTTTCTA 
ATTCCTAAAT TTGCGTTTTC TCTACCGTTT GGTAATAAAG ACATGAAAAT 
TTGATGAACT CGGTGAATCG AGAGTAAGAG TTTTGCGATT GTGACAATGA 
GTGATTAATA CAAGGATTAA GCTCCAAT

Gene models with high sequence identity

  1. AT2G38750.1 [+] show detail - annexin 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Annexin 2.8e-07
FPrintScan Annexin 2.8e-07
FPrintScan Annexin 2.8e-07
FPrintScan Annexin 2.8e-07
HMMPfam Annexin repeat 1.3e-11
HMMPfam Annexin repeat 1.4e-06
HMMPfam Annexin repeat 3.7e-10
HMMPanther Annexin like protein 2e-127
HMMPanther Annexin 2e-127
superfamily Annexin 4e-63
Coil coiled-coil 0
Gene3D Annexin repeat 9.8e-15
Gene3D Annexin repeat 7.9e-09
HMMSmart Annexin repeat 5.9e-05
HMMSmart Annexin repeat 0.0023

See the detailed result >

AT2G38750.1

Model type
Protein coding
Short Description
annexin 4
Curator Summary
Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.
Computational Description
annexin 4 (ANNAT4); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cell surface; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: annexin 8 (TAIR:AT5G12380.1); Has 2371 Blast hits to 2094 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1728; Fungi - 90; Plants - 415; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-B02 introduced

  • F13947 - seed::increased length / seed::decreased width
  • F25643 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found