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  3. RAFL04-20-D01

RAFL04-20-D01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00561)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-D01 - full reading 
AAAAAAAAAA AAAAAAAAAC ATCCAACACC AAAGACAATG GAGATGAGTT 
TGCGTCTCGC TTCATCTTCA ACCTCAAACC CAATTTGTCT ACTAAACCCT 
GGAAAAAACC TTAATTTCCC AATCCGAAAC CATAGAATCC CTAAAACTTC 
GAAACCCTTT TGCGTTAGGT CTTCAATGAG CTTGTCTAAA CCACCCAGAC 
AAACCTTATC TAGTAACTGG GATGTATCTA GCTTCTCCAT TGATTCCGTT 
GCTCAATCTC CTTCAAGACT CCCAAGTTTC GAAGAACTCG ATACCACCAA 
CATGTTGCTC CGTCAAAGAA TCGTCTTTTT GGGTTCTCAG GTTGATGATA 
TGACGGCGGA TTTGGTTATA AGTCAGCTAT TGTTACTAGA TGCTGAGGAC 
TCAGAAAGAG ACATTACGCT TTTTATCAAT TCACCCGGTG GATCTATTAC 
TGCTGGGATG GGAATATATG ATGCAATGAA ACAATGTAAG GCGGATGTAT 
CTACTGTTTG CTTAGGGTTA GCTGCATCTA TGGGTGCGTT TCTTCTTGCT 
TCTGGTTCAA AAGGGAAACG GTATTGTATG CCTAACTCTA AAGTTATGAT 
CCATCAGCCA CTTGGTACTG CTGGAGGCAA AGCAACGGAA ATGAGCATAC 
GTATAAGAGA AATGATGTAC CACAAGATTA AACTTAACAA AATCTTCTCT 
AGAATCACTG GGAAGCCTGA ATCAGAGATC GAAAGTGACA CAGACCGTGA 
TAACTTCTTG AATCCATGGG AGGCGAAAGA ATATGGTTTG ATCGACGCTG 
TAATCGATGA TGGGAAACCG GGACTAATCG CTCCAATTGG AGATGGTACT 
CCTCCTCCTA AAACCAAAGT CTGGGATCTT TGGAAAGTCG AAGGAACCAA 
GGAAGACAAC ACTAACTTGC CATCTGAGCG CTCCATGACA CAGAATGGTT 
ATGCCGCCAT TGAATAGAAC TGTTGTTGCA GCGTTTACGC CTTTTATATG 
TTATTCTGGT GGTACCTGTA ACCATATAAC GTTGCATTTC CTGTGTTTGT 
ACCATTTCTC TGATAGATTT TTGGAATAAT TTGAAGGCAA AAGATAGATT 
ATTTGTTG

Gene models with high sequence identity

  1. AT1G66670.1 [+] show detail - CLP protease proteolytic subunit 3
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMPfam Peptidase S14, ClpP 7.4e-71
HAMAP CLPP_MF_00444 36.161
HMMPanther Peptidase S14, ClpP 5.2e-81
Gene3D no description 1.6e-62
superfamily ClpP/crotonase 1.2e-48
FPrintScan Peptidase S14, ClpP 1.3e-46
FPrintScan Peptidase S14, ClpP 1.3e-46
FPrintScan Peptidase S14, ClpP 1.3e-46
FPrintScan Peptidase S14, ClpP 1.3e-46
FPrintScan Peptidase S14, ClpP 1.3e-46
PatternScan Peptidase S14, ClpP, active site 0
PatternScan Peptidase S14, ClpP, active site 0

See the detailed result >

AT1G66670.1

Model type
Protein coding
Short Description
CLP protease proteolytic subunit 3
Curator Summary
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational Description
CLP protease proteolytic subunit 3 (CLPP3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease P4 (TAIR:AT5G45390.1); Has 13369 Blast hits to 13367 proteins in 2989 species: Archae - 6; Bacteria - 8381; Metazoa - 147; Fungi - 79; Plants - 1070; Viruses - 92; Other Eukaryotes - 3594 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-D01 introduced

  • F13116 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

1 mutant line founds