Home
Full-length cDNAs
RAFL04-20-D23

RAFL04-20-D23

RIKEN Arabidopsis Full-length cDNAs

ATTTCCGTGA ATGTTGTGAT TAGCTTATTA TTATCTTCGT TGCCCAAAAA 
CTTAAAAGAT CCAAACTTCG AACAATTTTG GTGTCTGCTA TACAGAATCC 
AAATCCACCT TCTCCGATTA AAAATCCCTT CTCTTTCGAT CATGGATGTG 
TCTAAAGTTG TCAGCTTTTC CCGGAATTTC GCCGTCTTGG TCAAAGTCGA 
AGGCCCTGAT CCAAAGGGAT TGAAGATGAG GAAGCATGCT TTTCATCAAT 
ACCATTCTGG CAATGCAACA CTTTCAGCTT CTGGGATCTT GCTTCCAAGA 
GATATTTTTT TGAGTGGTGA GGTCGCTGCT AAGGTTCTGT TTGAAGCTGG 
TCAGGACATG GCCCTGGTTT TGACCGTTGC ATCTGTTGTT GAGCCATTCT 
TAACATTAGG TCACAGAACT AGTAGTAGTA TCTCTCAGGA TCCGGTGAAG 
CTTATTCCGG GTGCTATGAT TGAGATTATG GTGGAGGGTC AGCTAAAGTC 
AGAAAAGGAA TCTCCTTTTT GGGTTCCTGC GCAACTTCTT TCGCTGGTTG 
ATGTCCCTGT ATCTTCTGCT GCACTTCAAT CTCTTATTGA AGCTTCTTCT 
GGTTCGAAAG ATTCTGGATG GGATATTGGT TGGTCTTTGG TTTCTGCTGC 
TAATGGTTCT CAGCCTTCAA TCAATATTGA ACATTACAGC AAGCCCTTGA 
TGCAACTTGA TGAGCCACAC AACGCTAACT TCATGGCCAA GTCTGCCACT 
CGAATGGCTA TTCTAGGAGT CCCCTTAAGT TTACTGGGTC AACCAAGCAT 
GAATTTTGCT TCATCAAGTA GCAAGGGTGA TACACTTGTA GCACTAGGCT 
CTCCCTTTGG AATCCTTTCA CCTGTTAACT TTTTTAACAG CGTATCAACT 
GGTTCCATTG CGAATAGCTA TCCTTCTGGA TCCCTAAAGA AGTCACTGAT 
GATAGCTGAT GTTCGATGTC TCCCTGGAAT GGAAGGGGCT CCGGTGTTTG 
CTAAGAATGG GCACTTAATT GGCATTTTGA TTAGACCACT AAGGCAAAAG 
AATAGCGGCG TTGAAATTCA GCTGGTGGTT CCATGGGGAG CAATCACAAC 
TGCTTGCAGC CACTTGCTGC TTGAGGAACC ATCTGTAGAA GGAAAAGCAA 
GTCAGTGGGG GAGCGAAGTC CTAAGTGTTA AATCAGATGC TAGTATTCCT 
GCACAAGTGG CTATTGAGAA GGCGATGGAA TCAGTTTGTC TTATTACGGT 
CAATGATGGT GTTTGGGCTT CTGGTATTAT TCTTAACGAA CATGGTCTCA 
TACTAACAAA TGCTCACCTG CTTGAGCCGT GGAGGTATGG AAAAGGTGGT 
GTATATGGTG AAGGATTTAA ACCCTATGTC TTAGGAGCCG AGGAATTTTC 
TTCCACGGGA AGTAAATTTT GGGAACAGAA GAGTCAAACA TTGCCACGGA 
AAGCTCCACG AAATCATTAT TCGTCTGTTG GAGAGAACAT CAGGGAATAC 
AAACACAATT TCCTTCAGAC TGGGCATAGA GACATACGTG TGCGTTTGTG 
TCACCTAGAT TCTTGGACTT GGTGTCCTGC AAACGTGGTC TATATTTGCA 
AGGAACAATT AGATATTGCC TTACTGCAGC TAGAATATGT CCCTGGAAAG 
CTCCAACCTA TTACTGCCAA TTTTTCTTCT CCTCCTTTGG GTACAACAGC 
GCATGTTGTT GGACATGGAC TCTTCGGACC AAGATGTGGG CTTTCTCCTT 
CTATTTGTTC TGGAGTTGTA GCAAAGGTAG TTCACGCAAA GAGGAGATTG 
AATACGCAAT CCATTTCTCA AGAAGTCGCA GAGTTCCCCG CTATGCTCGA 
AACAACAGCT GCTGTGCATC CTGGTGGCAG TGGTGGTGCT GTTCTCAATT 
CAAGTGGCCA TATGATTGGA CTTGTTACCA GCAACGCAAG ACATGGAGCG 
GGGACTGTTA TACCGCATCT CAACTTCAGC ATCCCATGTG CAGTCTTGGC 
ACCAATCTTC AAGTTTGCAG AAGATATGCA GAACACAACG ATCCTTCAAA 
CACTTGATCA ACCTAGCGAA GAACTCTCAT CCATTTGGGC TTTGATGCCA 
TCACTATCAC CAAAGACTGA GCAGTCTCTA CCCAATCTGC CTAAGTTACT 
CAAAGATGGT AATAACAAAC AAACGAAAGG ATCTCAGTTT GCCAAGTTCA 
TTGCAGAGAC CCAAGACATG TTTGTAAAGC CGACCAAGCT TTCCCGTGAT 
GTGATCCCTA GCAAGTTATG ACAAGATTGG CTTCTTTGCA GAATTTGTGC 
CTTCTTTTAC TCCTTTTGCT GGAGTGGCAA CTTTAACTTT TGTATAGATA 
GAGAAATTAC AAAATGTTGC TGCTGTTTCT GGATTATTCT GTTTGTAACA 
TATATAAAAC CTTATAATAC GTTTTGGC

Gene models with high sequence identity

AT1G28320.1 [+] show detail - protease-related
E-value: 0; Score: 99.96

InterPro Scan Digest

Program	Description	E-value
superfamily	Serine/cysteine peptidase, trypsin-like	3.8e-27
superfamily	Serine/cysteine peptidase, trypsin-like	6.4e-09
Gene3D	no description	5.9e-05
Gene3D	no description	1e-05
HMMPanther	SERINE PROTEASE-RELATED	7e-161

See the detailed result >

AT1G28320.1

Model type: Protein coding
Short Description: protease-related
Curator Summary: Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.
Computational Description: DEG15; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 3917 Blast hits to 3716 proteins in 1340 species: Archae - 34; Bacteria - 3021; Metazoa - 72; Fungi - 16; Plants - 139; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL04-20-D23 introduced

F17109 - Specific phenotypes were NOT observed.
F24501 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found