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RAFL04-20-E13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07210)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-E13 - full reading 
AGCAGATTTT ACATGCGAAG GGCAACCGCT AGAACTACCT GAATCAGTGG 
TTCCAGAAGC CTTTAGAGAA TGGGAAGTGA AGGTGTTCGA TTGGCAGACG 
CAGTGTCCCA CTCTTGCCCA GCCCAACTCA CTATCCTTTC TTTACAAGTC 
CATCAAACTC CTCCCCACCG TTGGATGTGA AGCTGATGCA GCCACCCGTT 
ACAGCATCGA CCAGAGGATC ATCGGGGGAG GCAAATCCTC TGCATTAGCC 
TTTTCGTATT CTGTCACTGG CTCCTATGTC GCTGTGTGGC CTTTGCGGAA 
CAACCAGCTT GAGGTGGAGC ATTGTCTGAT CAATCCAAAG GACAAGGAGT 
CTCGTGTGAG GATTTTCCAG GTTGTCAGCT TAGCAGAGAC CACCAACATG 
TCCTTGCAGA GTGTCAAAGT TTTCTGTGAG CAGTGGTACG GTCCGTTCAG 
AGATGGCGAT CAGCTTGGAG GCTGTGCCAT CCGTAGCTCC GGCTTTGCTG 
CTACACCTAC CACTGCAGCT TCAGTGGTTA CCGGTTCTTG GAGAGTTCTA 
CTTGCTACCA CTAGCTTTCA CGCCTCTGAT TTCGGTTGTA TACAACAAGT 
TACTGGCGAG AAGGTGATTG AGATTGTGAG AGAAGAAAAT GATCTTTTAT 
TGCTTCCGCA AGAGCTGTGG TGCTCACTCC AACAAGGCAA AGACCGCGAA 
AGAGTATTTT CAGTAGGATG GGTCTTTGAG CCAGGCCATG CTATCACATC 
CAGCTGCGTC TTCTCTAGCG ATTCTAAGCT AAAGGAGGTA ACAATGGGGA 
GAGAGACTGC TCTATCAGAT GTATGATCAA TAATCGTTTA AATCTCCACA 
GATCATTCTT ATAATTTTCT TTGTAGGATG TGTGCACATA AGTCAAATTA 
CAATAATCTC ATATGACTTC CTATACTGAT GTTTGATTCA GTTTATCTGT 
TAATAATACA TATCAGTTCG TTTTAAAAAA AAAAG

Gene models with high sequence identity

  1. AT4G38225.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PROTEASE-RELATED 4.3e-212
HMMPanther PEPTIDASE M20 FAMILY MEMBER 4.3e-212
HMMPfam Domain of unknown function DUF3598 0.00013

See the detailed result >

AT4G38225.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-E13 introduced

  • F13730 - rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::decreased size / whole plant::decreased height / sporophyte vegetative stage::decreased speed / whole plant flowering stage::late / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found