1. Home
  2. Full-length cDNAs
  3. RAFL04-20-F22

RAFL04-20-F22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02382)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-F22 - full reading 
ACCACCACAG GCTCATTGAC AGAAAGAGAG TGGGAGAGAG ACATGACGGG 
CTGTGTGAAT TCTATTTCTC CGCCGCCGGT GACTTTATAC CGGCATCGTG 
CCTCTCCGTC ACGATCGTCC TTCTCATTAT CCGGCGATGC CTTACACTCT 
CTTTACCGGC ACCGACGTGT ATCAAGATCT CCGTCGATTA TCGCTCCCAA 
ATTTCAGATT GTGGCGGCTG AAAAATCGGA GCCTCTGAAA ATTATGATAT 
CAGGAGCTCC TGCTTCTGGT AAAGGTACAC AATGCGAGCT GATTACTCAC 
AAATATGGTT TGGTGCATAT CTCTGCTGGA GATTTGCTGA GGGCTGAAAT 
CGCTTCTGGA AGTGAAAATG GAAGACGTGC TAAAGAACAT ATGGAGAAAG 
GACAATTGGT CCCTGATGAA ATAGTTGTAA TGATGGTAAA AGATCGTTTA 
TCACAGACAG ATTCAGAGCA AAAAGGATGG CTTTTGGATG GATATCCAAG 
GAGTGCATCA CAGGCAACAG CTCTCAAGGG ATTTGGATTC CAGCCTGATC 
TATTCATTGT CCTCGAAGTT CCTGAAGAAA TTCTAATTGA AAGAGTTGTT 
GGGCGTCGAT TGGATCCTGT CACAGGAAAG ATCTACCACT TGAAGTATTC 
GCCTCCAGAG ACAGAAGAGA TTGCTGTTAG ACTCACCCAA CGTTTTGATG 
ATACCGAAGA GAAGGCAAAA CTGCGGCTGA AGACTCATAA CCAAAATGTG 
AGTGATGTGC TTTCTATGTA CGACGATATA ACAATTAAGA TCGAGGGAAA 
CCGCTCAAAA GAGGAAGTGT TTGCCCAGAT CGATTCTTCT CTGTCCGAAT 
TGCTTCAAGA GAGGAACACT GCTCCAAGTT CACTTTTAAG TTGATTCGTT 
CTTGGTACAA ACCTGATGAA GTGCTTACCC AGATCGACAC TACTATGTCC 
AAATTGCTTC AACAGAGGAA CTCTGCTTCA AGTTCACTTG TAAGTTGAAT 
CATTCTTAGC AAGGACCTAA CCAGCGGTAA ATATCCTTTC TTGCATTTAT 
CACACTCGAT TGATATCTCT TGTATCGCAA TAACGGGTTG TTTTGTCGCC 
AGTAAGACAA TGTACCTCAC ACCTCAGAAA TATGCAGACC TTCTTCTTAT 
T

Gene models with high sequence identity

  1. AT5G47840.1 [+] show detail - adenosine monophosphate kinase
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
PatternScan Adenylate kinase 0
HMMTigr Adenylate kinase, subfamily 2.2e-85
superfamily P-loop containing nucleoside triphosphate hyd 1.3e-52
superfamily Adenylate kinase, active site lid domain 0.0000000047
HMMPanther ADENYLATE KINASE 9.4e-99
HMMPanther Adenylate kinase 9.4e-99
HMMPfam Adenylate kinase 2e-48
Gene3D no description 1.8e-65
FPrintScan Adenylate kinase 7.3e-22
FPrintScan Adenylate kinase 7.3e-22
FPrintScan Adenylate kinase 7.3e-22
FPrintScan Adenylate kinase 7.3e-22
HAMAP Adenylate kinase 27.136

See the detailed result >

AT5G47840.1

Model type
Protein coding
Short Description
adenosine monophosphate kinase
Computational Description
adenosine monophosphate kinase (AMK2); FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase family protein (TAIR:AT5G35170.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-F22 introduced

  • F16133_77 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found