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  3. RAFL04-20-H15

RAFL04-20-H15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17010)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-H15 - full reading 
CCCCGAGTCG CAAAACCACC GCCGTATATC CACGGCCGTC TTATCACCGG 
CAACAACCGT AGGTTTTTGT TTTCCGTCGC GATGGAGGTG GATAAGAAGG 
ACGAGAGAGA GGCTGAATCT TCGGAGCAAG TGGTGAATCC ATGGGAAGTG 
TCCGCCAAAG ACGGCGGGAA GATCGATTAC GACAAGCTTA TTGACAAATT 
TGGATGTCAA AGGCTTGACG AGTCACTGAT TGATCGTGTT CAGAGACTGA 
CTTCTCGTCA ACCACACGTG TTCCTCCGCC GTAGTGTCTT CTTCGCCCAC 
CGGGATTTCA ATGAGATTTT GGACGCTTAT GAGAGAGGAG ACAAGTTCTA 
TCTCTACACT GGAAGAGGAC CTTCATCAGA AGCATTGCAT TTGGGGCATT 
TGATTCCTTT CATGTTTACC AAATACTTGC AAGAAGCTTT CAAGGTTCCC 
CTTGTTATAC AGCTCACGGA TGATGAAAAA AGTATATGGA AGAACTTATC 
GGTGGAGGAA AGTCAAAGAC TTGCCAGAGA AAATGCGAAA GATATTATTG 
CTTGTGGATT CGATGTAACA AAGACCTTCA TTTTCTCGGA CTTCGACTAT 
GTTGGCGGTG CTTTCTATAA AAATATGGTG AAGGTTGGCA AGTGCGTTAC 
ACTTAATAAG GCTATGGGAA TCTTTGGCTT TTCCGGTGAA GATCCTATCG 
CGAAACTCAG TTTCCCTCCT GTGCAGGCAG TTCCATCTTT TCCTAGCTCA 
TTCCCACATT TGTTCCCTGG CAAGGACAAT CTCCGCTGCT TGATTCCTTG 
TGCTATTGAC CAGGATCCTT ATTTTAGAAT GACTCGTGAT GTCGCACCCC 
GGTTAGGCTA TAGCAAGCCC GCCCTGATTG AGTCAACATT TTTTCCTGCG 
TTGCAGGGAG AGAATGGAAA AATGTCTGCT AGTGATCCAA ATTCTGCTAT 
CTATGTGACT GATTCCGCAA AGGACATTAA AAACAAGATA AACAGATATG 
CGTTTAGTGG TGGGCAAGAC TCCATTGAGA AGCACCGAGA ACTTGGAGCA 
AATCTCGAGG TTGACATACC CGTCAAGTAT CTGAGTTTCT TCCTCGAAGA 
CGATTCTGAA CTAGAACACA TTAAAAAGGA ATATGGAGAA GGAAGAATGC 
TAACAGGAGA AGTAAAGAAG AGACTTACGG AAGTGTTGAC AGAAATTGTG 
GAGAGACACC GCAGGGCTCG AGCTGCTGTT ACTGATGAGA TGGTTGATGC 
GTTCATGGCG GTGAGACCTC TCCCAAGCAT GTTCGAATAG AAAAAGTCAG 
AAACCCTTTT TGGCTCCTCA GCAACTTCAC ATCACTCCGT TTGATTTGGA 
TTCAGACATC TTTGGGTGTC TATTGATAGA TTTGATCCTT GAAATTGAAC 
CATACTTGTT AGTTACAATT TTCATATTTA CATTTATTTA TGAATCACAT 
TCTAAAATGA TTTGCATTGT TAATTGAATA AAGTGAAACT ACAAATTTAT 
GAATTTTTTT AAAAAAAAGA

Gene models with high sequence identity

  1. AT3G04600.1 [+] show detail - Nucleotidylyl transferase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Aminoacyl-tRNA synthetase, class I, conserved site 0
superfamily Nucleotidylyl transferase 1e-105
HMMTigr Tryptophanyl-tRNA synthetase, class Ib 2.4e-114
HMMPanther Tryptophanyl-tRNA synthetase, class Ib 7.2e-129
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.6e-105
Gene3D no description 5.7e-47
FPrintScan Tryptophanyl-tRNA synthetase, class Ib 1.6e-22
FPrintScan Tryptophanyl-tRNA synthetase, class Ib 1.6e-22
FPrintScan Tryptophanyl-tRNA synthetase, class Ib 1.6e-22
FPrintScan Tryptophanyl-tRNA synthetase, class Ib 1.6e-22
HMMPfam Aminoacyl-tRNA synthetase, class Ib 9.3e-25

See the detailed result >

AT3G04600.1

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: tryptophan-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, tryptophanyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 2279 Blast hits to 2207 proteins in 761 species: Archae - 485; Bacteria - 802; Metazoa - 304; Fungi - 268; Plants - 65; Viruses - 5; Other Eukaryotes - 350 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-H15 introduced

  • F11833 - Specific phenotypes were NOT observed.
  • F25820 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found