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RAFL04-20-H24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07216)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-H24 - full reading 
AAAAAAAAAA ATACAAATCG TTCACCGGAA AAAAACAAAA TGGCTCGTCG 
CGATGTTCTC CTCCCTTTCC TCCTCCTTCT CGCCACCGTC TCCGCCGTAG 
CTTTCGCCGA AGATGATCCA GACTGTGTAT ACACATTCTA CCTCAGAACC 
GGATCGATCT GGAAAGCCGG AACCGATTCG ATCATCAGCG CAAGAATCTA 
CGATAAGGAC GGTGACTACA TCGGAATCAA AAACCTTCAA GCTTGGGCTG 
GATTAATGGG ACCTGATTAC AATTACTTCG AGAGGGGTAA TCTCGACATT 
TTCAGTGGAA GAGCACCGTG TTTACCTAGT CCGATCTGTG CCTTAAACCT 
AACCTCCGAT GGCTCCGGCG ATCACCATGG TTGGTACGTT AATTACGTTG 
AGATCACGAC GGCTGGTGTT CACGCACAGT GCTCGACGCA GGATTTTGAG 
ATTGAGCAAT GGCTCGCTAC TGATACTTCT CCTTATGAGC TCACCGCCGT 
ACGGAACAAT TGTCCGGTCA AGCTTAGGGA TAGTGTTAGT CGGGTCGGGT 
CTGAGATTCG GAAAAAGCTT TCTTGGGTCG TTTAAGTGAT GTGTTGTGAT 
TCGTGAGACT TGTCTGTATT GTTTGTATTC TCGTTGTTCT TGTGAGTGTA 
ATGTGGCGTT AATGAAATAT GATTCAATAA AATAAAACCT TTTTAGC

Gene models with high sequence identity

  1. AT4G39730.1 [+] show detail - Lipase/lipooxygenase, PLAT/LH2 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Lipoxygenase, LH2 23.322
HMMPfam Lipoxygenase, LH2 7.2e-23
Gene3D Lipoxygenase, LH2 2.6e-07
superfamily Lipase/lipooxygenase, PLAT/LH2 2.2e-25

See the detailed result >

AT4G39730.1

Model type
Protein coding
Short Description
Lipase/lipooxygenase, PLAT/LH2 family protein
Computational Description
Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT2G22170.1); Has 247 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 94; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-H24 introduced

  • F03107 - Specific phenotypes were NOT observed.
  • F17142 - Specific phenotypes were NOT observed.
  • F18047 - Specific phenotypes were NOT observed.
  • F20951 - Specific phenotypes were NOT observed.
  • F26509 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found