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  3. RAFL04-20-J15

RAFL04-20-J15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07218)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-J15 - full reading 
ATTCACACAC AAGTTGGTGT CAACGCTCAG ACAAGAAAGG CGTGTGTTCA 
TTGTTGAATC TTCCCATTTC CTCATCCAAA TTCCGACATA ACTATCCTAG 
CCGCCATTTG TTCTCCACAT TACAAAACCC TCAGCAGCTT CAAAACTCTT 
CCGATCTCTC CCTCACGCTC GCAATTCTCT CGTCTCCATT TTAATAGTTT 
TTCTTCTCGG AATCACAAAT CTTCGGCTTC TTGTTCCTTG GCGTGTGTGT 
GTGTTGTTGA ATGGCTCTTG TTCAGCGGAT TCCAATTTCC TCCTCCAGTA 
TTCGGAATTG GCAACAAGCG AGGACCAATT TGACTCCTAT TTGTTGTTTA 
CATTACAATA CTGCATCTTC TTCTTCTTCA CCCTTTACAG AGAAGCACTC 
TGTGGAGAGA TACCAAAGGG ATCAATGGCT GTACAAAGCG GTTGAACCAA 
CGCCACCATC GACTCCATCT CCATCGCCAT TTGAAGATGA AGTCTTTGTT 
AGGGAAAACG ACATTGCATC GCAGCTGCCT GAGCTGAAGA AGCTTTTGGC 
AGTGCTGAAA GAGAAGAGAG TTAAAGGATG CAAAGGTGGT GATTGTGGAC 
CAGGAGATGT GTATCTTGTT GGGACAGGGC CAGGAGATCC TGAGCTTTTG 
ACTCTTAAAG CTGTCAGAGT TATTCAAAGT GCCGATCTTT TGCTTTACGA 
CAGGCTTGTC TCCAATGATG TCTTGGAGTT GGTTGCTCCT GATGCTAGAC 
TTCTTTATGT CGGCAAAACT GCTGGTTATC ATAGCAGAAC TCAGGAAGAG 
ATTCATGAAC TACTCCTAAA TTTTGCTGAA GCTGGTGCCA CTGTTGTCAG 
GCTTAAAGGT GGAGATCCTC TGGTCTTTGG ACGGGGCGGC GAAGAAATGG 
ACTTTCTGCA ACAGCAAGGG ATTCGAGTTC AAGTTATACC AGGGATAACT 
GCGGCGTCGG GGATAGCAGC AGAGTTGGGG ATTCCACTAA CACATCGAGG 
TGTTGCAACT AGTGTAAGGT TTCTCACTGG TCATTCAAGG AAAGGAGGGA 
CAGACCCTCT GTTTGTTGCA GAGAATGCAG CTGACCCGGA TACAACACTT 
GTCGTTTATA TGGGTTTGGG AACTTTACCT TCTCTTGCAC AAAAACTAAT 
GGACCATGGT CTCCCTTCTG ATACACCAGC TGTTGCGGTT GAACGTGGAA 
CCACTCCTCT ACAGCGTACA GTTTTTGCTG AGCTTAAAGA TTTTGCAACT 
GAGATTCAGT CAGCTGGATT GGTGTCACCA ACACTCATCA TCATAGGGAA 
AGTCGTTGAG CTCTCACCTT TATGGCCACA TTGCACGAAA GAATCCTCCT 
GCCTTGTAGA GACCCGGTAG ATATTTCACT CTTATTTTAC GGGCGTGTGG 
CTTCCATCGA CATTACGGTG AAGTTTTAGG AGCTATGGAG CTATGAAGGT 
TGAGACTTGA GAGATGTAAT AAACAAAAAG GAAAGCTGAT AGTTTCTTAT 
GACGTGTCCT TCAATTGTTT TGGGACAATG GTAATGGCAA TGTTAATGTA 
ATAAACAAGT TTCAATCAGT GCCACTGTGA CTAATTTTTC CACCACAAGA 
TGATGTCTTT AAAACTTTAA TAGTCAAATT CAAATC

Gene models with high sequence identity

  1. AT5G40850.1 [+] show detail - urophorphyrin methylase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PTHR21091:SF16 4.30000170646176e-113
PatternScan Uroporphiryn-III C-methyltransferase, conserved site 0
Gene3D Tetrapyrrole methylase, subdomain 2 1.60000240695986e-36
HMMPIR Uroporphyrin-III C-methyltransferase, plant 0
HMMTigr Uroporphyrin-III C-methyltransferase, C-terminal 5.6999970878395e-108
HMMPfam Tetrapyrrole methylase 3.09999999999998e-47
Gene3D Tetrapyrrole methylase, subdomain 1 1e-38
superfamily Tetrapyrrole methylase 4.2e-69
HMMPanther PTHR21091 4.30000170646176e-113
PatternScan Uroporphiryn-III C-methyltransferase, conserved site 0

See the detailed result >

AT5G40850.1

Model type
Protein coding
Short Description
urophorphyrin methylase 1
Curator Summary
Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Computational Description
urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-J15 introduced

  • F12649 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / cauline leaf::epinastic / whole plant::decreased height / stem::present in fewer numbers in organism
  • F17924 - Specific phenotypes were NOT observed.
  • F25711 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found