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RAFL04-20-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02395)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-L08 - full reading 
TGGTCCAGTC AAATATAATA ATAAGCCATT GAAAAAAATG GCGGAGGAGA 
GCAGAGTCCC ATCATCGGTG TCGGTAACAG TCGCCCACGA CCTTCTTCTA 
GCCGGCCACC GCTATCTAGA CGTCAGGACT CCAGAAGAGT TCAGCCAGGG 
ACATGCCTGT GGGGCGATCA ACGTGCCTTA CATGAATCGA GGAGCATCAG 
GGATGTCAAA GAACCCCGAC TTCCTGGAAC AAGTCTCCTC CCATTTCGGA 
CAATCCGATA ACATCATTGT TGGCTGCCAG AGCGGTGGTA GATCTATCAA 
AGCCACCACC GATCTTCTCC ATGCAGGTTT CACGGGAGTC AAAGATATCG 
TCGGTGGCTA TAGTGCCTGG GCCAAGAATG GCCTTCCTAC AAAGGCTTGA 
TGACTCACCA TTCACCAAAC ATCTTTCCTT ATCTCTTCGT CTCCTTCTTC 
TTCAATAATG CATCCTTTCC GCATGTAATC ATCAATAAAT GACCCTCCTT 
TCTCTTTGCT GTCTGATGTG ATAGCTTGGA GGGAGGGGCT CATCGCATCT 
TTTTAAAATA TATAAAAATA CGAGTGTGTG TTGATTGCG

Gene models with high sequence identity

  1. AT5G66040.1 [+] show detail - sulfurtransferase protein 16
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Rhodanese-like 18.907
superfamily Rhodanese-like 1.6e-26
HMMSmart Rhodanese-like 5.1e-20
Gene3D Rhodanese-like 7.6e-31
HMMPfam Rhodanese-like 2.1e-16
HMMPanther FAMILY NOT NAMED 6.4e-07

See the detailed result >

AT5G66040.1

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 3621 Blast hits to 3614 proteins in 1089 species: Archae - 47; Bacteria - 2736; Metazoa - 68; Fungi - 45; Plants - 236; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-L08 introduced

  • F08509 - Specific phenotypes were NOT observed.
  • F11133 - Specific phenotypes were NOT observed.
  • F17411 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found