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RAFL04-20-M20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00736)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-M20 - full reading 
AACCCAAATC GAAGCATTTC AGGGTCACCA CAAGTGGCCT TGGACAATCA 
CCAGACGGCA ATTTGCCAAC AATCTACACG CTCTGGCTCA AGTCATAACC 
TTCACAGTTC TTCCACTAGA CCTTGCATTT AACGACCCTG TGTTTCACGG 
CTTTGTGTGC ACATTTGCAT TTTGCATATT GTTTAGCCAG CAATTCCATG 
CTTGGGCACA TGGAACCAAG AGCAAGCTTC CACCTCTCGT GGTCGCGTTG 
CAGGACATGG GGTTACTTGT TTCACGGAGA CAGCATGCGG AACATCATCG 
AGCACCGTAT AACAACAATT ACTGCATCGT GAGTGGAGCA TGGAACAATG 
TTCTGGATGA GAGTAAGGTC TTTGAGGCAT TGGAGATGGT GTTTTATTTC 
CAGCTTGGGG TGAGACCTAG GTCATGGAGT GAGCCAAACT CTGACTGGAT 
AGAAGAAACC GAAATCTCCA ACAACCAAGC ATAAATATTT TTTTTACAGA 
GTGATACATG TACAAGAAAA TTTCAGTAAT ATACTGAAAA GATTTCTTCG 
TAATTTATAT GTAACGAGTG TGACTGTATT TAATACTGTA TAAAACAAGC 
AAAACAACTG AGCATGTACC ATTTAAGTAT CG

Gene models with high sequence identity

  1. AT4G27030.1 [+] show detail - fatty acid desaturase A
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G27030.1

Model type
Protein coding
Short Description
fatty acid desaturase A
Curator Summary
Encodes an unusual palmitate desaturase that is highly substrate specific. It introduces a delta-3 trans double bond at palmitate at the sn-2 position of phosphatidylglycerol.
Computational Description
fatty acid desaturase A (FADA); FUNCTIONS IN: Delta 3-trans hexadecenoic acid phosphatidylglycerol desaturase activity; INVOLVED IN: response to karrikin, phosphatidylglycerol metabolic process, unsaturated fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kua-ubiquitin conjugating enzyme hybrid, localisation (InterPro:IPR019547); BEST Arabidopsis thaliana protein match is: Kua-ubiquitin conjugating enzyme hybrid localisation domain (TAIR:AT1G62190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-M20 introduced

  • F01420 - Specific phenotypes were NOT observed.
  • F01625 - seed::increased size / seed::increased length
  • F03926 - Specific phenotypes were NOT observed.
  • F08237 - Specific phenotypes were NOT observed.
  • F20126 - Specific phenotypes were NOT observed.
  • F23505 - Specific phenotypes were NOT observed.
  • F25712 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found