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  3. RAFL04-20-P19

RAFL04-20-P19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02400)

full reading [+] show sequence

Nucleotide sequence: RAFL04-20-P19 - full reading 
ATCTTCTCCG TTAAACCCAT TTAAATAGTT TTCATTGTCC TTGTGAAAAA 
TGCAATTCTC TTCATCTTCT ATTACTTCTT TCACTTGGAC AGTTTTAATC 
ACAGTGGGAT GTCTTATGCT TTGTGCGTCT TTCTCCGATG CTCAACTTAC 
CCCTACTTTT TACGACACTT CATGTCCTAC CGTCACCAAC ATTGTAAGAG 
ATACCATTGT CAACGAGCTA AGATCGGACC CTCGTATCGC CGGGAGCATC 
CTTCGTCTTC ACTTCCATGA CTGCTTTGTT AATGGTTGTG ATGCTTCGAT 
CTTGTTAGAC AACACGACAT CATTTCGAAC AGAGAAAGAT GCACTTGGAA 
ATGCAAATTC AGCCCGAGGA TTTCCAGTGA TTGATAGAAT GAAAGCTGCG 
GTGGAGAGGG CATGCCCAAG AACCGTTTCA TGCGCAGATA TGCTCACCAT 
TGCTGCTCAA CAATCTGTCA CTTTGGCAGG AGGTCCTTCT TGGAAGGTTC 
CTTTAGGGAG AAGAGACAGC TTACAAGCAT TTCTAGATCT TGCTAACGCA 
AATCTTCCAG CTCCATTCTT CACACTTCCA CAGCTTAAAG CCAACTTCAA 
AAATGTTGGC CTCGATCGTC CTTCTGATCT TGTTGCGCTC TCCGGGGCTC 
ACACATTTGG TAAAAATCAA TGTCGATTCA TTATGGACAG ATTATACAAC 
TTTAGCAACA CTGGATTACC TGACCCTACA CTCAACACTA CTTACCTCCA 
AACTCTTCGT GGTCAATGTC CTCGCAATGG TAATCAAAGC GTCTTAGTGG 
ATTTCGATCT GCGTACGCCT TTGGTTTTCG ACAACAAATA CTATGTGAAT 
CTTAAAGAGC AAAAAGGTCT TATCCAGAGC GACCAAGAGT TGTTCTCTAG 
CCCCAATGCC ACTGACACAA TCCCCTTGGT GAGAGCATAT GCTGATGGCA 
CACAAACATT CTTCAATGCA TTCGTGGAGG CAATGAATAG GATGGGAAAT 
ATTACACCAA CTACAGGAAC TCAAGGACAA ATCAGGTTGA ATTGTAGAGT 
GGTGAACTCC AACTCTCTAC TCCATGATGT GGTGGATATC GTTGACTTTG 
TAAGTTCTAT GTGAGAATAG TTGACTCAAT ATCTGGCGAC CAGACTATAT 
GTTAAGATAA ATAAGCGGGA TCTCAAGTTG TTACTTGAGC AGGAGCAGAT 
TGTATTGGTG TTTATAGTAT CCAAGTAGTT CTCTGTTTTT TTTTTATATT 
GGCCTTTGAT AGCGTTTTGT TAATCGGTCT AAGCTTCTAT GGTTTTGGAC 
TGTTTTATCC T

Gene models with high sequence identity

  1. AT3G49110.1 [+] show detail - peroxidase CA
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Haem peroxidase, plant/fungal/bacterial 79.934
HMMPfam Haem peroxidase, plant/fungal/bacterial 1.5e-70
PatternScan Peroxidases heam-ligand binding site 0
PatternScan Peroxidase, active site 0
superfamily Haem peroxidase 1.2e-112
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Plant peroxidase 5.8e-68
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
Gene3D no description 9.8e-61

See the detailed result >

AT3G49110.1

Model type
Protein coding
Short Description
peroxidase CA
Curator Summary
Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.
Computational Description
peroxidase CA (PRXCA); FUNCTIONS IN: peroxidase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to light stimulus, defense response to bacterium, defense response to fungus, unidimensional cell growth; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4322 Blast hits to 4294 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 31; Plants - 4239; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-20-P19 introduced

  • F03423 - Specific phenotypes were NOT observed.
  • F04551 - Specific phenotypes were NOT observed.
  • F05444 - Specific phenotypes were NOT observed.
  • F09602 - Specific phenotypes were NOT observed.
  • F10543 - Specific phenotypes were NOT observed.
  • F11038 - Specific phenotypes were NOT observed.
  • F15446 - seed::increased size / seed::increased length
  • F21710 - Specific phenotypes were NOT observed.
  • F21819 - seed::increased size / seed::increased length
  • F21831 - Specific phenotypes were NOT observed.
  • F22225 - Specific phenotypes were NOT observed.
  • F25431 - Specific phenotypes were NOT observed.
  • F27102 - Specific phenotypes were NOT observed.
  • F28110 - Specific phenotypes were NOT observed.
  • F29202 - Specific phenotypes were NOT observed.
  • F30312 - seed::increased width

Mutant lines with disrupted or induced

18 mutant lines found