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  3. RAFL05-01-B14

RAFL05-01-B14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00669)

full reading [+] show sequence

Nucleotide sequence: RAFL05-01-B14 - full reading 
GAAAACAGAA CAAAAAAAAA AATCTCTCTC AATCTCTCTC AGATCTGAAT 
CCATCCATCA CCGATCTCTA ATGGCGGCAC CACCAGCATC ATCCTCGGCG 
AGGGAAGAGT TCGTGTACCT CGCAAAGCTC GCAGAGCAAG CGGAACGTTA 
CGAAGAAATG GTTGAATTCA TGGAAAAAGT CGCTGAAGCC GTTGACAAAG 
ACGAACTCAC CGTCGAAGAA CGTAATCTCC TCTCCGTCGC TTACAAAAAC 
GTAATCGGCG CTCGTCGTGC TTCCTGGAGA ATCATCTCTT CCATTGAACA 
AAAAGAAGAG AGTCGTGGTA ACGATGACCA TGTGACCACG ATCCGTGATT 
ACAGAAGCAA GATCGAATCT GAGTTATCGA AAATCTGTGA CGGTATTCTT 
AAGCTTCTTG ATACTAGACT TGTTCCTGCT TCTGCTAATG GAGATTCTAA 
GGTTTTTTAC CTTAAGATGA AGGGAGATTA TCATAGGTAT TTGGCTGAGT 
TTAAGACTGG TCAAGAGAGG AAAGATGCTG CTGAACATAC TCTCACCGCT 
TACAAAGCTG CTCAGGATAT TGCTAATGCT GAATTGGCTC CAACGCATCC 
GATTCGTCTT GGTTTGGCTT TGAATTTCTC TGTGTTTTAC TATGAGATTC 
TTAATTCTCC AGATCGTGCT TGTAATCTCG CTAAGCAGGC GTTTGATGAA 
GCCATTGCTG AGTTAGATAC TCTTGGAGAG GAGTCATACA AGGATAGTAC 
CTTGATCATG CAGCTTCTTC GTGACAATCT TACTCTCTGG ACTTCTGACA 
TGCAGGACGA AAGTCCGGAG GAGATTAAAG AAGCAGCAGC ACCAAAGCCT 
GCTGAAGAAC TGAAGGAGAT CTAAGTTTGT GGTTTCTTTT TTCAGTATTC 
TTAAGTTATG CAATTATAAT TATGTTTCTG CTTGGTGTTT ATTTTCTAAT 
CTTTCCTTTG CTATCCCCGA AGCTTCTAAG GCCGTCTAAT TCTTGTCCTT 
TGTTTGCTTT TCTCAATCGT GGATGCTACT GGATTTCTGT TTTGTTTTAC 
TTCTTCTCTT GATTGATTGC ATTTCCCGGC TTATGCCTTG TACTTGAAAC 
TCAGTTTTCT CTCTTATTAA TGATTTGCCA TTCACCTGGT

Gene models with high sequence identity

  1. AT1G35160.1 [+] show detail - GF14 protein phi chain
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
Gene3D 14-3-3 protein 1.1e-106
superfamily 14-3-3 protein 1.9e-106
HMMSmart 14-3-3 protein 3.7e-203
Coil coiled-coil 0
HMMPfam 14-3-3 protein 1.5e-115
PatternScan 14-3-3 protein 0
PatternScan 14-3-3 protein 0
HMMPIR 14-3-3 protein 1.3e-177
FPrintScan 14-3-3 protein 3e-88
FPrintScan 14-3-3 protein 3e-88
FPrintScan 14-3-3 protein 3e-88
FPrintScan 14-3-3 protein 3e-88
FPrintScan 14-3-3 protein 3e-88
FPrintScan 14-3-3 protein 3e-88
HMMPanther 14-3-3 protein 2.3e-209

See the detailed result >

AT1G35160.1

Model type
Protein coding
Short Description
GF14 protein phi chain
Curator Summary
GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1
Computational Description
GF14 protein phi chain (GF14 PHI); FUNCTIONS IN: protein phosphorylated amino acid binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: nuclear envelope, plasma membrane, cytoplasm; EXPRESSED IN: cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 2 (TAIR:AT1G78300.1); Has 2689 Blast hits to 2679 proteins in 386 species: Archae - 0; Bacteria - 6; Metazoa - 1256; Fungi - 306; Plants - 766; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-01-B14 introduced

  • F09522 - Specific phenotypes were NOT observed.
  • F17324 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found