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  3. RAFL05-01-G05

RAFL05-01-G05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00738)

full reading [+] show sequence

Nucleotide sequence: RAFL05-01-G05 - full reading 
AAAGAAATTA AAAGTGTTCT TGTTGCTGTA GAACACAAAC AGAACAAACA 
AAAAATCAAT TGAAGAGTCT CTCAGTCGTT AGGGGAAGCA AATAGAGAAA 
TGGCTAGCTT TACTGCCTCC GCTTCCACCG TCTCCGCCGC TCGTCCGGCT 
CTCCTTCTCA AGCCTACCGT CGCCATCTCT GCTCCTGTTC TTGGTTTGCC 
TCCAATGGGT AAGAAGAAGG GAGGAGTGAG ATGTTCAATG GAGACAAAGC 
AAGGAAACGT CTCAGTCATG GGGGCTGGAG TTTCAGCTGC AGCAACAGCT 
GCTTTGACGG CGGTGATGAG CAATCCCGCG ATGGCTTTGG TTGATGAGAG 
GATGTCAACA GAAGGAACAG GATTACCCTT TGGTCTAAGC AACAACCTCT 
TGGGTTGGAT TCTGTTTGGA GTCTTTGGTT TGATCTGGAC TTTCTTCTTC 
GTCTACACTT CATCTCTCGA GGAGGATGAA GAATCTGGTC TTTCACTCTG 
AAGGAAGAAT CAATCTTTCG TCTTCTCATT TCCATTTTCA TGTGAGAACA 
TGAATCAAAA GTGTTCACCC TTCTAGTTTC TTGTAATTGT TAAGTAAAGA 
CTAAAAACTA TTTTCATGTG TGTTT

Gene models with high sequence identity

  1. AT2G30570.1 [+] show detail - photosystem II reaction center W
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G30570.1

Model type
Protein coding
Short Description
photosystem II reaction center W
Curator Summary
Encodes a protein similar to photosystem II reaction center subunit W.
Computational Description
photosystem II reaction center W (PSBW); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbW, class 2 (InterPro:IPR009806); Has 77 Blast hits to 77 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-01-G05 introduced

  • F05409 - Specific phenotypes were NOT observed.
  • F05432 - Specific phenotypes were NOT observed.
  • F09121 - Specific phenotypes were NOT observed.
  • F11126 - Specific phenotypes were NOT observed.
  • F15529 - seed::increased size / seed::increased length
  • F20527 - Specific phenotypes were NOT observed.
  • F20605 - seed::increased size
  • F26331 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found