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  3. RAFL05-01-I24

RAFL05-01-I24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00702)

full reading [+] show sequence

Nucleotide sequence: RAFL05-01-I24 - full reading 
GCCACTGAAC ACTATCGATC TAATCTTTTC AGCTCTCTCC ATCGTCGTCG 
TATCTGTGAC TCTCGTGATC ATCGCCTGAA AAAAATTTGA GATAATGGCC 
AGAAAGTTCT TCGTCGGAGG CAACTGGAAA TGTAACGGAA CTGCTGAGGA 
GGTGAAGAAG ATTGTGAACA CTCTTAATGA AGCTCAGGTT CCTTCACAGG 
ATGTTGTAGA GGTTGTGGTT AGCCCTCCAT ATGTTTTTCT TCCCCTGGTT 
AAGAGCACAT TGAGGTCTGA CTTTTTTGTT GCGGCACAAA ACTGTTGGGT 
TAAGAAAGGA GGTGCTTTCA CTGGTGAAGT GAGTGCGGAG ATGCTTGTGA 
ACTTGGATAT TCCATGGGTT ATCCTTGGTC ACTCTGAAAG GAGGGCAATC 
CTTAATGAAT CAAGCGAGTT CGTCGGAGAC AAGGTTGCCT ATGCACTTGC 
TCAAGGTTTG AAAGTGATTG CTTGTGTTGG TGAGACTCTT GAGGAGCGGG 
AAGCTGGATC GACCATGGAT GTTGTGGCTG CCCAGACCAA GGCTATTGCC 
GATCGGGTGA CAAACTGGTC AAATGTTGTC ATAGCCTATG AACCAGTGTG 
GGCCATTGGA ACCGGAAAGG TCGCTAGCCC AGCCCAAGCT CAAGAAGTAC 
ACGATGAGCT GAGGAAATGG CTGGCCAAGA ACGTGAGTGC TGATGTCGCT 
GCTACAACCC GCATCATTTA TGGAGGATCC GTCAATGGTG GTAACTGCAA 
GGAGCTAGGT GGACAGGCCG ATGTTGATGG TTTCTTGGTC GGTGGTGCTT 
CTCTAAAGCC TGAGTTTATC GACATCATTA AGGCCGCAGA GGTGAAGAAA 
AGTGCCTAAT GAGCTCATTA AGCAATTTAA AAGTCCTTTG CTTTTCCAGT 
CGCAACTCTG AAAAAATGAA TAAGTTGGTA TTATGATATG ATACATTTTG 
CTTCAGTTGT ATTTGGCAAA AGTTTCTCTC TTACTATATT GTTTTGAGAA 
CGCAACAATC ATTTTCTTCG CCATTTATTT AGCTGTGGAC TTGCAATTTG 
CAAATCCCTT CCTTTTGC

Gene models with high sequence identity

  1. AT3G55440.1 [+] show detail - triosephosphate isomerase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Triosephosphate isomerase, active site 0
HMMPanther Triosephosphate isomerase 5.9e-160
ProfileScan Triosephosphate isomerase 81.587
superfamily Triosephosphate isomerase 9e-97
HMMTigr Triosephosphate isomerase 3.2e-131
Gene3D Aldolase-type TIM barrel 4.6e-91
HMMPfam Triosephosphate isomerase 6.3e-88

See the detailed result >

AT3G55440.1

Model type
Protein coding
Short Description
triosephosphate isomerase
Curator Summary
Encodes triosephosphate isomerase.
Computational Description
triosephosphate isomerase (TPI); FUNCTIONS IN: triose-phosphate isomerase activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Triosephosphate isomerase, active site (InterPro:IPR020861), Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: triosephosphate isomerase (TAIR:AT2G21170.1); Has 11466 Blast hits to 11464 proteins in 3595 species: Archae - 48; Bacteria - 6204; Metazoa - 1205; Fungi - 243; Plants - 477; Viruses - 0; Other Eukaryotes - 3289 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-01-I24 introduced

  • F12818 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found