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RAFL05-01-J03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00760)

full reading [+] show sequence

Nucleotide sequence: RAFL05-01-J03 - full reading 
CTCTCCTTTT CTTCCTCAAC TCATAAACCC GATCGGCCGA TTCCTTCACA 
ATTATCCTTA AAATTTTCGA TTTTGATTAT TGGGTTTCTC TCTGATCATG 
GCGGTTGTTG AGACTGGAGC AGCAGCTACT GCTGCTGATG CAGGAGGAGT 
CGTGATCCAG CCGCCGCCGT CTTCACCACC ATCTTCAATG ACTAGTCAAG 
ATTCCGGCGT TTCTTCCGAT GATCAGAACC ATCACTCTAG GATCGATCAA 
GTTCTCCGGC ACGATCAAGG TCTTTACAGC AAGATCGGGT CACACGTGGC 
GAGATCCGAC GGCGTTGACG GTGGTGAGAG CTTTAAGCGT GATATGAGAG 
AGCTTCAGGA GCTTTTCTCT AAGCTTAATC CTATGGCTGA AGAGTTGTTC 
CTCCTTCTCT GAATAAACAA GGAGGTAACG GTGTTAACGG TGGTTTCTTC 
ACCTCTGCTG GTTCCTTCTT CCGCAACAAT GGCTTTGCTG GTACCGGAAA 
TGGCGGATAC GGTAACGAAA ACGGTGGTTT CCGACGGAAG AAGAGTTTTG 
GTCAAGGGAA ACGAAGGATG AATGCTCGAA CAAGCATGGC TCAGCGAGAA 
GATGTTATCC GTAGAACCGT CTACGTCTCT GATCTCGATC AACAGGTCAC 
TGAAGAGCAG CTTGCTGGTT TGTTTGTGAG CTGTGGACAG GTTGTTGACT 
GTCGCATATG CGGTGACCCA AACTCGGTCC TTCGGTTTGC ATTCATAGAG 
TTCACTGATG AAGAGGGTGC GATGACTGCT CTAAATTTAT CGGGGACTAT 
GTTGGGATTC TATCCTGTGA AAGTTTTACC ATCCAAAACA GCTATAGCAC 
CGGTTAACCC GACATTTTTG CCTAGGACTG AAGATGAGAG TGAGATGTGT 
GCAAGAACTA TCTACTGTAC TAACATAGAC AAGAAGGTGA CTCAATCAGA 
CGTGAAGATC TTTTTTGAGT ACTTCTGCGG AGAGGTTTAT CGCCTGAGGC 
TGCTTGGAGA TTATCAACAC TCGACTCGTA TTGCTTTTGT AGAGTTCGTA 
ATGGCGGAAA GCGCAATAGC TGCTCTCAAC TGCAGTGGAG TTGTTCTTGG 
TTCTTTACCT ATAAGGGTGA GTCCTTCAAA GACGCCTGTT CGTCCGAGAT 
CACCGAGGCA TCCAATGCAT TGATCTTAGC TTTACAGGTT TTCACATATC 
TCATGTCTCC GCAATATATA TATCGCTGTG TCGTCTTAAA AACAGCATTA 
CACAGACATG TAAAGATGTT TGTCTGCATC TCTCATCTCT TGTTTTCGAA 
ATGTAACTCT GGGATCTGAT GATGCTTCTT TCTTCTTCCT TTACCTGAGA 
ATCTTTTGGG TAAAAAAAAC CTCGTAGAGA GTTTTTATTT ATCTCTTAAA 
AAGAAAAGAG CTT

Gene models with high sequence identity

  1. AT1G32790.1 [+] show detail - CTC-interacting domain 11
    E-value: 0; Score: 99.79

 

InterPro Scan Digest

Program Description E-value
ProfileScan RNA recognition motif, RNP-1 13.857
ProfileScan RNA recognition motif, RNP-1 11.213
HMMPfam RNA recognition motif, RNP-1 3.1e-12
HMMPfam RNA recognition motif, RNP-1 1.4e-07
HMMSmart RNA recognition motif, RNP-1 5.6e-14
HMMSmart RNA recognition motif, RNP-1 2.4e-10
HMMPanther RNA-BINDING PROTEIN 2.9e-16
superfamily RNA-binding domain, RBD 3.3e-17
superfamily RNA-binding domain, RBD 6.6e-14
Gene3D Nucleotide-binding, alpha-beta plait 2.6e-14
Gene3D Nucleotide-binding, alpha-beta plait 4.9e-10

See the detailed result >

AT1G32790.1

Model type
Protein coding
Short Description
CTC-interacting domain 11
Curator Summary
RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.
Computational Description
CTC-interacting domain 11 (CID11); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 (TAIR:AT4G10610.1); Has 4154 Blast hits to 3448 proteins in 292 species: Archae - 0; Bacteria - 29; Metazoa - 2530; Fungi - 406; Plants - 814; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-01-J03 introduced

  • F04512 - Specific phenotypes were NOT observed.
  • F20916 - Specific phenotypes were NOT observed.
  • F25914 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found