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Full-length cDNAs
RAFL05-01-M18

RAFL05-01-M18

RIKEN Arabidopsis Full-length cDNAs

AGCCTCTCTG TTTCATCTTC TTCTCTAAAC TCTCAACATG TCTTGCTCGG 
CCACCGATCT CGCTGTCCTG TTGGGTCCTA ATGCCACGGC GGCGGCCAAC 
TACATCTGTG GCCAGTTAGG CGACGTCAAC AACAAATTTA TCGACACCGC 
TTTCGCTATA GACAACACTT ACCTTCTCTT CTCCGCCTAC CTTGTCTTCT 
CTATGCAGCT TGGCTTCGCT ATGCTCTGTG CCGGTTCCGT GAGAGCCAAG 
AATACTATGA ACATCATGCT TACCAACGTC CTTGACGCTG CAGCCGGTGG 
TCTCTTCTAT TATCTGTTTG GCTACGCCTT TGCCTTTGGA TCTCCGTCCA 
ATGGTTTCAT CGGTAAACAC TACTTTGGTC TCAAAGACAT CCCCACGGCC 
TCTGCTGACA CTCCAACTTT CTCTACCAAT GGGCCTTTGC AATCGCTGCG 
GCTGGAATCA CAAGTGGCTC GATCGCTGAA CGGACACAGT TCGTGGCTTA 
CCTAATCTAT TCCTCTTTCT TAACCGGGTT TGTTTACCCG GTCGTCTCTC 
ACTGGTTCTG GTCAGTTGAT GGATGGGCCA GCCCGTTCCG TACCGATGGA 
GATTTGCTTT TCAGCACCGG AGCGATAGAT TTCGCTGGGT CCGGTGTTGT 
TCATATGGTC GGAGGTATCG CTGGACTCTG GGGTGCGCTC ATCGAAGGTC 
CACGACTTGG CCGGTTCGAT AACGGAGGCC GTGCCATCGC TCTTCGTGGC 
CACTCGGCGT CACTTGTTGT CCTTGGAACA TTCCTCCTCT GGTTTGGATG 
GTACGGATTT AACCCCGGTT CCTTCAACAA GATCCTAGTC ACGTACGAGA 
CAGGCACATA CAACGGCCAG TGGAGCGCGG TCGGACGGAC AGCTGTCACA 
ACAACGTTAG CTGGCTGCAC CGCGGCGCTG ACAACCCTAT TTGGGAAACG 
TCTACTCTCG GGACATTGGA ACGTCACTGA TGTATGCAAC GGCCTCCTCG 
GAGGGGTTTG CAGCCATAAC TGGTGGCTGC TCTGTCGTTG AGCCATGGGC 
TGCGATCATC TGCGGGGTTC GGGGCGGCCC TAGTCCTCCT CGGATGCAAC 
AAGCTCGCTG AGAAGCTCAA ATACGACGAC CCTCTTGAGG CAGCACAACT 
ACACGGTGGT TGCGGTGCGT GGGGACTAAT ATTCACGGCT CTCTTCGCTC 
AAGAAAAGTA CTTGAACCAG ATTTACGGCA ACAAACCCGG AAGGCCACAC 
GGTTTGTTTA TGGGCGGTGG AGGAAAACTA CTTGGAGCTC AGCTGATTCA 
GATCATTGTG ATCACGGGTT GGGTAAGTGC GACCATGGGG ACACTTTTCT 
TCATCCTCAA GAAAATGAAA TTGTTGCGGA TATCGTCCGA GGATGAGATG 
GCCGGTATGG ATATGACCAG GCACGGTGGT TTTGCTTATA TGTACTTTGA 
TGATGATGAG TCTCACAAAG CCATTCAGCT TAGGAGAGTT GAGCCACGAT 
CTCCTTCTCC TTCTGGTGCT AATACTACAC CTACTCCGGT TTGATTTGGA 
TTTTTACTTT TATTCTCTAT TTTCTAGAGT ATTATTTTAA ATGATGTTTT 
GTGATACTTA AATATTGTTT TGGATATTTT TTTGCATTTC AGTAATGTTT 
TAGATGTACA GTTTCATGGG GTTGTGATGA TAATATCTAT GTGGTCATTT 
GTGTTC

Gene models with high sequence identity

AT4G13510.1 [+] show detail - ammonium transporter 1;1
E-value: 0; Score: 99.77

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Ammonium transporter	3.9e-64
HMMPfam	Ammonium transporter	1.6e-20
HMMPfam	Ammonium transporter	8.7e-07
HMMPfam	Ammonium transporter	2e-35
superfamily	Ammonium transporter	1.8e-46
superfamily	Ammonium transporter	4.6e-18
superfamily	Ammonium transporter	1.3e-18
PatternScan	Ammonium transporter, conserved site	0
HMMPanther	AMMONIUM TRANSPORTER 1	2.8e-130
HMMPanther	Ammonium transporter	2.8e-130
HMMPanther	AMMONIUM TRANSPORTER 1	3.9e-59
HMMPanther	Ammonium transporter	3.9e-59
HMMPanther	AMMONIUM TRANSPORTER 1	1e-07
HMMPanther	Ammonium transporter	1e-07
HMMPanther	AMMONIUM TRANSPORTER 1	2.8e-83
HMMPanther	Ammonium transporter	2.8e-83

See the detailed result >

AT4G13510.1

Model type: Protein coding
Short Description: ammonium transporter 1;1
Curator Summary: Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.
Computational Description: ammonium transporter 1;1 (AMT1;1); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, transport, protein polymerization, response to karrikin; LOCATED IN: nucleus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;3 (TAIR:AT3G24300.1); Has 11619 Blast hits to 11599 proteins in 2072 species: Archae - 224; Bacteria - 4688; Metazoa - 462; Fungi - 431; Plants - 505; Viruses - 0; Other Eukaryotes - 5309 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-01-M18 introduced

F07518 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found