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  3. RAFL05-01-M18

RAFL05-01-M18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00758)

full reading [+] show sequence

Nucleotide sequence: RAFL05-01-M18 - full reading
AGCCTCTCTG TTTCATCTTC TTCTCTAAAC TCTCAACATG TCTTGCTCGG 
CCACCGATCT CGCTGTCCTG TTGGGTCCTA ATGCCACGGC GGCGGCCAAC
TACATCTGTG GCCAGTTAGG CGACGTCAAC AACAAATTTA TCGACACCGC
TTTCGCTATA GACAACACTT ACCTTCTCTT CTCCGCCTAC CTTGTCTTCT
CTATGCAGCT TGGCTTCGCT ATGCTCTGTG CCGGTTCCGT GAGAGCCAAG
AATACTATGA ACATCATGCT TACCAACGTC CTTGACGCTG CAGCCGGTGG
TCTCTTCTAT TATCTGTTTG GCTACGCCTT TGCCTTTGGA TCTCCGTCCA
ATGGTTTCAT CGGTAAACAC TACTTTGGTC TCAAAGACAT CCCCACGGCC
TCTGCTGACA CTCCAACTTT CTCTACCAAT GGGCCTTTGC AATCGCTGCG
GCTGGAATCA CAAGTGGCTC GATCGCTGAA CGGACACAGT TCGTGGCTTA
CCTAATCTAT TCCTCTTTCT TAACCGGGTT TGTTTACCCG GTCGTCTCTC
ACTGGTTCTG GTCAGTTGAT GGATGGGCCA GCCCGTTCCG TACCGATGGA
GATTTGCTTT TCAGCACCGG AGCGATAGAT TTCGCTGGGT CCGGTGTTGT
TCATATGGTC GGAGGTATCG CTGGACTCTG GGGTGCGCTC ATCGAAGGTC
CACGACTTGG CCGGTTCGAT AACGGAGGCC GTGCCATCGC TCTTCGTGGC
CACTCGGCGT CACTTGTTGT CCTTGGAACA TTCCTCCTCT GGTTTGGATG
GTACGGATTT AACCCCGGTT CCTTCAACAA GATCCTAGTC ACGTACGAGA
CAGGCACATA CAACGGCCAG TGGAGCGCGG TCGGACGGAC AGCTGTCACA
ACAACGTTAG CTGGCTGCAC CGCGGCGCTG ACAACCCTAT TTGGGAAACG
TCTACTCTCG GGACATTGGA ACGTCACTGA TGTATGCAAC GGCCTCCTCG
GAGGGGTTTG CAGCCATAAC TGGTGGCTGC TCTGTCGTTG AGCCATGGGC
TGCGATCATC TGCGGGGTTC GGGGCGGCCC TAGTCCTCCT CGGATGCAAC
AAGCTCGCTG AGAAGCTCAA ATACGACGAC CCTCTTGAGG CAGCACAACT
ACACGGTGGT TGCGGTGCGT GGGGACTAAT ATTCACGGCT CTCTTCGCTC
AAGAAAAGTA CTTGAACCAG ATTTACGGCA ACAAACCCGG AAGGCCACAC
GGTTTGTTTA TGGGCGGTGG AGGAAAACTA CTTGGAGCTC AGCTGATTCA
GATCATTGTG ATCACGGGTT GGGTAAGTGC GACCATGGGG ACACTTTTCT
TCATCCTCAA GAAAATGAAA TTGTTGCGGA TATCGTCCGA GGATGAGATG
GCCGGTATGG ATATGACCAG GCACGGTGGT TTTGCTTATA TGTACTTTGA
TGATGATGAG TCTCACAAAG CCATTCAGCT TAGGAGAGTT GAGCCACGAT
CTCCTTCTCC TTCTGGTGCT AATACTACAC CTACTCCGGT TTGATTTGGA
TTTTTACTTT TATTCTCTAT TTTCTAGAGT ATTATTTTAA ATGATGTTTT
GTGATACTTA AATATTGTTT TGGATATTTT TTTGCATTTC AGTAATGTTT
TAGATGTACA GTTTCATGGG GTTGTGATGA TAATATCTAT GTGGTCATTT
GTGTTC

Gene models with high sequence identity

  1. AT4G13510.1 [+] show detail - ammonium transporter 1;1
    E-value: 0; Score: 99.77

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ammonium transporter 3.9e-64
HMMPfam Ammonium transporter 1.6e-20
HMMPfam Ammonium transporter 8.7e-07
HMMPfam Ammonium transporter 2e-35
superfamily Ammonium transporter 1.8e-46
superfamily Ammonium transporter 4.6e-18
superfamily Ammonium transporter 1.3e-18
PatternScan Ammonium transporter, conserved site 0
HMMPanther AMMONIUM TRANSPORTER 1 2.8e-130
HMMPanther Ammonium transporter 2.8e-130
HMMPanther AMMONIUM TRANSPORTER 1 3.9e-59
HMMPanther Ammonium transporter 3.9e-59
HMMPanther AMMONIUM TRANSPORTER 1 1e-07
HMMPanther Ammonium transporter 1e-07
HMMPanther AMMONIUM TRANSPORTER 1 2.8e-83
HMMPanther Ammonium transporter 2.8e-83

See the detailed result >

AT4G13510.1

Model type
Protein coding
Short Description
ammonium transporter 1;1
Curator Summary
Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.
Computational Description
ammonium transporter 1;1 (AMT1;1); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, transport, protein polymerization, response to karrikin; LOCATED IN: nucleus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;3 (TAIR:AT3G24300.1); Has 11619 Blast hits to 11599 proteins in 2072 species: Archae - 224; Bacteria - 4688; Metazoa - 462; Fungi - 431; Plants - 505; Viruses - 0; Other Eukaryotes - 5309 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-01-M18 introduced

  • F07518 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found