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  3. RAFL05-01-O06

RAFL05-01-O06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00673)

full reading [+] show sequence

Nucleotide sequence: RAFL05-01-O06 - full reading 
ACCTCTTCTT CTTCTTCGCA TAAACCTTAA AAACCATTTC CACGATCTTC 
TTCTTCTTCT TCCCTCAAAT ATAGCTTAGG ATTTTCTTAA TTTCCTCTAC 
CCAAGCTCCA TGGCTGCTTT CAATTTCTTC CTCTCTTCTT AATTCTCTCA 
GGTAGGGGAG ATTTGAGTAG TAGTAGATTG TTAGATTTGT AATTCAGCTA 
TTGGTGAAGA GGAAGGGAGA GAGAGATGTG TTGAATTGGT TGAGTTTGGT 
GGAGGAAAGA AGAAGAAGAA ATGAATGTGA GCCATGCATC GGTACATCCA 
GTGGAAGATC CTCCTGCAGC TGCGACGGAA GTAGAGAATC CGCCTCGGGT 
GAGGATGGAT GATATGGAAG GAATGCCTGG AACATTGCTT GGTCTTGCAT 
TGCGTTTTTT TCAGTTCTTG TTTGCTGCTG CTGCTCTTTG TGTCATGGCT 
TCTACTAGTG ATTTTCCTTC CGTTACCGCC TTCTGCTACC TAGTTGCAGC 
TACTGGTCTG CAGAGCTTGT GGAGTCTTGC ACTAGCCATG GTTGACGTCT 
ATGCCATTAT GGTCAAACGC TCTCTACAGA ACCGTCGACT TGTGAGCTTG 
TTTGCAATTG GTGATGGGGT GACATCGACG CTGACTTTTG CAGCAGCTTG 
TGCATCGGCA GGCATAACGG TTCTAATAGA CAACGATCTG AATAGCTGCG 
CACAAAACCA CTGTGTTCAG TTTGAAACAT CAACGGCATT AGCTTTCATA 
AGCTGGTTCG CTGCTTTGCC TTCGTTTCTC TTCAATTTCT GGTCTCTTGC 
ATCCCGTTGA CACGATACTG CTCAGCAAGA TGTGTTTTCA TGGTGTGTTT 
TTCGGTGTAT AGTGACTGAT TTTTCTTCTT CTTTCTTGTT TTGGGTTTGG 
AACCAACTTT CTTCAAACCC AATACTTGGA AACTGGGAAT TGTTTTGTAG 
ACGACGACCT TATTCATTTT GTTGTACAAT GAAACTATCT GGTCGGCTTT 
GTTGTATGAT TGAAGAAATT TCAGATGTTG AATGCAC

Gene models with high sequence identity

  1. AT2G28370.1 [+] show detail - Uncharacterised protein family (UPF0497)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G28370.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G37200.1); Has 210 Blast hits to 210 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-01-O06 introduced

  • F13610 - Specific phenotypes were NOT observed.
  • F16351 - rosette leaf::decreased width / cauline leaf::abnormal
  • F16635 - Specific phenotypes were NOT observed.
  • F25522 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / rosette leaf::present in greater numbers in organism / stem::decreased thickness / sporophyte vegetative stage::decreased speed / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found