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RAFL05-01-P22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00711)

full reading [+] show sequence

Nucleotide sequence: RAFL05-01-P22 - full reading 
ATCTCTCGTC TTCACCATTC TTCTCACTTC TTCTTTTCTC CTTATATTTC 
ATTTCTTCCA CATAACTAAA AAAAAAAGGA ATTAGCGATG AGGGGAGGTG 
ATGGAGAAGA AGGATCGGAG TCAAGAGTTG CACTGTTGAA AAGTCCTCAC 
ACGGCGGAGG AAGACGGTGA AGGATTGAAG GATAGAATTT TGGTTGAGAC 
AAAAAAGCTA TGGCAAATAG TTGGTCCGGC CATATTCAGT CGAGTAACGA 
CATATTCGAT GCTTGTAATC ACTCAAGCTT TCGCTGGTCA TCTCGGCGAT 
CTTGAACTCG CCGCCATATC CATCGTTAAT AACGTCACCG TTGGCTTCAA 
CTTTGGCCTC TTGCTTGGAA TGGCGAGTGC GTTGGAAACG CTGTGTGGAC 
AAGCGTTTGG AGCGAAGAAA TATCATATGT TGGGAGTTTA TATGCAGCGT 
TCTTGGATTG TTCTCTTCTT TTGCTGTGTC TTGTTATTAC CAACTTATAT 
TTTCACTACT CCGGTTCTTA AATTTCTTGG TCAACCGGAC GATATCGCTG 
AGCTGTCCGG TGTTGTCGCC ATTTGGGTCA TACCGCTTCA TTTCGCCTTC 
ACTTTGTCTT TTCCCCTTCA ACGTTTCCTT CAGTGCCAGC TCAAAAACCG 
AGTGACTGCG TATGCGGCAG CGGTTGCATT GGTGGTTCAT ATTTTAGTGT 
GTTGGTTGTT CGTGGACGGG CTTAAACTAG GAGTCGTGGG GACTGTAGCT 
ACGATTAGTA TCTCGTGGTG GGTCAATGTT CTTATTCTGT TAGTTTACTC 
TACTTGTGGT GGTTGTCCGC TTACTTGGAC CGGCTTATCC TCTGAAGCCT 
TAACCGGACT TTGGGAATTC CTTAAACTCT CTGCTTCTTC AGGCGTCATG 
CTCTGTTTGG AGAATTGGTA TTATCGGATT TTGATTATAA TGACTGGGAA 
TCTTCAAAAT GCTCGAATCG CCGTTGACTC CTTGTCCATA TGCATGGCGA 
TAAATGGTTG GGAGATGATG ATACCTCTCG CTTTCTTCGC CGGAACCGGT 
GTCCGTGTGG CGAACGAATT AGGAGCTGGT AATGGTAAAG GAGCAAGATT 
TGCGACGATT GTATCGGTAA CACAATCGTT GATAATCGGA TTGTTTTTTT 
GGGTGCTAAT AATGCTTCTC CATAACCAAA TCGCATGGAT CTTCTCTTCG 
AGTGTAGCCG TCTTAGACGC CGTCAATAAA CTCTCACTTC TGCTAGCTTT 
CACCGTTCTT CTTAACAGCG TTCAACCGGT TCTTTCCGGT GTGGCGGTTG 
GATCGGGTTG GCAATCGTAC GTGGCATATA TAAACTTGGG ATGTTACTAT 
TGCATTGGTG TTCCACTTGG GTTTCTCATG GGCTGGGGTT TTAAACTCGG 
TGTCATGGGA ATTTGGGGTG GTATGATTTT TGGAGGAACC GCTGTTCAAA 
CCATGATCTT AAGTTTTATC ACAATGAGAT GTGACTGGGA AAAAGAGGCG 
CAGAAAGCAA GTGCTCGTAT TAACAAATGG TCCAACACAA TAAAATGATT 
CAAGATTTTG TTGAATCAAC TATTAAATAA TTTTGCAGCA TAATATGGTT 
TTGGAAAACT GGTGTATGTT TTGTATCCAA ATGTGATACA ACATATTTAG 
AGCCGGTTCA TAGATTACAT AGGATCGCTG CAATTACTGC AAAATGGCCT 
TTGTGATTTT CTTTTTATAG CATGCCTTGT AATATTATTA GATAAAACTG 
CTTTATTTTA ATTTAGTAAA AATAATAAAA AGTTATTGGT TT

Gene models with high sequence identity

  1. AT5G65380.1 [+] show detail - MATE efflux family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Multi antimicrobial extrusion protein MatE 2.9e-68
HMMPanther MULTIDRUG RESISTANCE PUMP 1.7e-265
HMMPanther Multi antimicrobial extrusion protein MatE 1.7e-265
HMMPfam Multi antimicrobial extrusion protein MatE 2e-29
HMMPfam Multi antimicrobial extrusion protein MatE 1.7e-31

See the detailed result >

AT5G65380.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, ripening, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G44050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-01-P22 introduced

  • F09104 - rosette leaf::decreased size / stem::decreased thickness / whole plant::decreased height
  • F17740 - Specific phenotypes were NOT observed.
  • F18830 - Specific phenotypes were NOT observed.
  • F26940 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found