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  3. RAFL05-02-C24

RAFL05-02-C24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00817)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-C24 - full reading 
AAAATGGAGA TTGTAGAAGA ACAAGCTCCT CTCACCATTT CTTCTTCTTC 
TTCTCTCTAA AAGAAAAGAG ACTTCACCGA TTCTTTTTTA TTATTCCTTC 
CCAGATTTTC TCGGGAAATT AATTCTTTTC CTCCTCTTTC TTCTCACTTG 
TTGTTGTTCC TTAACACTCT CTTCCTAGAT CTACTATTAA CTGATTTCAT 
TTCACGACTA AACCATCGAA GTCTTCGGCA AGATATGGAT TTGTTTCTGT 
TCTATTAAAC TTGTTTCAAT CGAGAAGTAA AAAAGAATCC GATTCCACAG 
GTGGAACTAT GTGCTGTGGA TCAGACCGAT TAAACCAGAT CGTGTCATCA 
AGATCTTCGT TGCCAATTTC TTTCGAGGAA GATAACAATC TTGTTACCAA 
CACAGACATG AATCACTTAA CAGTCGAAAC AGAGGATACG TTTGCGAGCT 
TGCTTGAGCT TGCAGCTAAC AACGATGTTG AAGGTGTAAG GCTATCTATC 
GAGAGAGACC CTTCTTGTGT AGACGAAGCT GGTCTCTGGT ACGGTCGTCA 
AAAAGGTTCT AAAGCTATGG TCAACGATTA CAGGACTCCG TTGATGGTTG 
CTGCTACTTA CGGAAGCATT GATGTGATCA AGCTTATTGT TTCTTTGACT 
GATGCTGACG TGAACCGTGC TTGCGGGAAT GATCAGACCA CTGCGTTACA 
CTGCGCTGCT TCTGGAGGAG CTGTGAATGC TATCCAAGTT GTTAAGCTGC 
TTCTTGCAGC TGGAGCTGAT TTGAATCTGT TGGATGCTGA AGGTCAACGA 
GCTGGTGATG TTATTGTTGT TCCTCCTAAG CTTGAAGGCG TGAAGCTGAT 
GCTTCAGGAG CTTCTTTCTG CTGATGGATC ATCTACTGCG GAGCGGAATC 
TACGGGTTGT GACAAATGTT CCGAATAGAA GCTCATCTCC GTGTCATTCT 
CCTACTGGAG AGAATGGTGG ATCAGGGTCT GGTTCACCGC TCGGCTCTCC 
TTTTAAGCTG AAATCTACTG AATTCAAGAA AGAGTATCCG GTTGATCCGT 
CTTTGCCAGA TATCAAGAAC AGTATCTACG CGACTGATGA GTTTAGAATG 
TATTCCTTCA AGGTCCGGCC TTGCTCTCGT GCTTATTCAC ATGATTGGAC 
TGAGTGTCCT TTTGTTCACC CGGGTGAAAA CGCGAGGAGG AGAGACCCGA 
GGAAGTTCCA TTACAGCTGC GTTCCTTGCC CGGATTTTAG GAAAGGAGCT 
TGTAGGAGAG GAGATATGTG TGAGTATGCG CACGGTGTGT TTGAATGCTG 
GCTTCATCCG GCTCAGTACA GGACCCGTCT TTGCAAAGAT GGAACAGGCT 
GTGCTCGGCG GGTTTGTTTC TTTGCGCATA CACCCGAGGA GCTTCGACCT 
TTGTACGCAT CAACTGGTTC AGCGGTTCCT TCGCCTAGAT CGAATGCTGA 
TTATGCAGCT GCTTTGAGTC TCCTTCCTGG TTCTCCATCA GGAGTCTCTG 
TCATGTCCCC GCTTTCCCCA TCAGCAGCGG GGAACGGAAT GTCTCATTCG 
AATATGGCTT GGCCACAACC AAATGTCCCT GCGTTGCACT TACCAGGAAG 
CAATCTACAG TCAAGCAGGC TAAGGTCTTC TCTCAATGCA AGGGATATCC 
CGACGGATGA GTTCAATATG TTAGCGGATT ACGAGCAGCA GCAACTCCTC 
AACGAGTATT CCAATGCTCT GAGCCGTTCT GGTCGGATGA AATCAATGCC 
TCCTTCGAAT CTTGAAGATC TTTTCTCAGC AGAAGGCTCT TCATCTCCCC 
GGTTCACTGA TTCCGCTTTA GCTTCCGCGG TGTTCTCGCC TACACACAAG 
TCAGCTGTCT TCAACCAGTT CCAACAACAG CAACAGCAGC AGCAGAGCAT 
GTTGTCTCCA ATCAACACAA GCTTTTCTTC ACCAAAGAGC GTTGACCACT 
CATTGTTTTC AGGTGGAGGA AGAATGTCTC CTCGGAATGT TGTTGAACCA 
ATATCACCCA TGAGTGCTCG GGTTTCCATG TTGGCTCAGT GCGTGAAGCA 
ACAACAACAG CAACAGCAGC AGCAGCAGCA GCAACATCAG TTCCGTAGCC 
TTAGCTCCAG AGAGCTCAGA ACAAACTCTA GCCCAATCGT TGGTTCACCG 
GTAAACAACA ACACATGGTC ATCAAAATGG GGATCTTCAA ATGGTCAACC 
GGATTGGGGA ATGAGCTCAG AAGCACTTGG TAAGTTGAGA TCTTCGTCAT 
CGTTTGATGG TGATGAGCCT GATGTGTCAT GGGTCCAGTC ACTGGTGAAG 
GAGACTCCAG CAGAAGCCAA AGAGAAAGCA GCAACATCTT CCTCAGGGGA 
ACACGTGATG AAGCAGCCAA ATCCGGTTGA ACCGGTAATG GATCATGCTG 
GGCTAGAAGC TTGGATTGAG CAAATGCAGC TCGATCAGCT TGTGGCTCAG 
CAGAATTGAG AGACCTAACC AAAGAATCAC ATGTTCTTGT CTGGTCTCTC 
TATGTGGTAG ATAAAAACCT CTTTTTTACA GGTGGTGGTG GTAGAAGGGT 
AACAAGATTA ACAAAGAAGA GAAGAGAAGA AAGAAGATTT CTTTGTTTTT 
GGTCAATTAA TTTTCACAAA AAACAGTTTT TTTTTTTTTT ATTTAGAGAA 
GAGAAGGGAA CAATACAAGA AAAAGGCTTA TGGGAAGAAA GGAGATGAAA 
CAAAACCTTC TTGGTTTTCT TTCTCCCATT TTCAATTTTT TTTTAGGGAT 
TTCTTTCTCC CATTATCATT ATTATTATTG TTATTAATAT TATTATTTTT 
TATAC

Gene models with high sequence identity

  1. AT2G41900.1 [+] show detail - CCCH-type zinc finger protein with ARM repeat domain
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ankyrin repeat 0.0062
HMMSmart Ankyrin repeat 0.0039
HMMSmart Zinc finger, CCCH-type 4e-06
HMMSmart Zinc finger, CCCH-type 68
HMMPanther UNCHARACTERIZED 6.4e-07
ProfileScan Ankyrin repeat 12.476
ProfileScan Zinc finger, CCCH-type 13.582
ProfileScan Zinc finger, CCCH-type 6.963
ProfileScan Ankyrin repeat-containing domain 16.308
Gene3D Ankyrin repeat-containing domain 6.5e-13
FPrintScan Ankyrin repeat, sub-type 9.6e-05
FPrintScan Ankyrin repeat, sub-type 9.6e-05
superfamily Ankyrin repeat-containing domain 2.1e-20
superfamily CCCH zinc finger 0.0018
superfamily CCCH zinc finger 0.011
HMMPfam Ankyrin repeat 0.00012
HMMPfam Ankyrin repeat 1.9e-06
HMMPfam Zinc finger, CCCH-type 7.9e-05

See the detailed result >

AT2G41900.1

Model type
Protein coding
Short Description
CCCH-type zinc finger protein with ARM repeat domain
Computational Description
CCCH-type zinc finger protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger protein with ARM repeat domain (TAIR:AT5G12850.1); Has 5399 Blast hits to 3519 proteins in 384 species: Archae - 10; Bacteria - 312; Metazoa - 2497; Fungi - 280; Plants - 489; Viruses - 8; Other Eukaryotes - 1803 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-C24 introduced

  • F29119 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found