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RAFL05-02-D04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00844)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-D04 - full reading 
GAATCAGCGG CTTCACCTCT CCAGATTTCG TGTGTGAAGA ATCATTTCAA 
GCCATGTCTC CGGCTAAAGT TGATACTACC AAGAAGGCTG ATCCTAAGGC 
CAAGGCCTTG AAGGCGGCAA AGGCTGTGAA GTCTGGTCAA GCCTTCAAGA 
AGAAGGACAA AAAGATTAGG ACCAAGGTCA CCTTCCACAG GCCAAAGACT 
CTTACCAAGC CTAGAACTGG TAAGTACCCA AAAATCAGCG CTACTCCAAG 
GAACAAGTTG GATCACTACC AAATCCTTAA GTACCCACTC ACCACTGAAT 
CTGCGATGAA GAAGATTGAA GACAACAACA CTCTTGTTTT CATTGTTGAC 
ATTCGTGCTG ACAAGAAGAA GATTAAGGAT GCTGTTAAGA AGATGTATGA 
CATCCAGACC AAGAAAGTGA ACACACTCAT CAGGCCTGAT GGAACCAAGA 
AGGCTTACGT GAGGCTTACA CCAGACTATG ATGCTTTGGA TGTTGCTAAC 
AAGATCGGCA TCATCTAAGT CTATCTATCT CTGCAGTTAT AAAGACTATT 
GTGGTTTTGT CTCTTGTAGT CTCAGTTTTG CTTTTAAGAT ATTTATTATT 
ACTATCATCT GGTAATTGTA GTATTTTGGA GCAAAAACGT TTTACAATAC 
ATTCATGTTG CAGTTT

Gene models with high sequence identity

  1. AT2G39460.2 [+] show detail - ribosomal protein L23AA
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein L23/L25, conserved site 0
HMMTigr Ribosomal protein L23 1.2e-35
HMMPfam Ribosomal protein L25/L23 8.4e-19
HMMPfam Ribosomal protein L23/L25, N-terminal 5.4e-17
HMMPanther 60S RIBOSOMAL PROTEIN L23A 1.1e-71
superfamily Ribosomal protein L23/L15e, core 9.4e-28
Gene3D Nucleotide-binding, alpha-beta plait 9e-31

See the detailed result >

AT2G39460.2

Model type
Protein coding
Short Description
ribosomal protein L23AA
Curator Summary
Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.
Computational Description
ribosomal protein L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AB (TAIR:AT3G55280.2); Has 2634 Blast hits to 2634 proteins in 929 species: Archae - 307; Bacteria - 1168; Metazoa - 411; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-D04 introduced

  • F05548 - stem::increased thickness / root::present in greater numbers in organism
  • F23706 - Specific phenotypes were NOT observed.
  • F26422 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found