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  3. RAFL05-02-D20

RAFL05-02-D20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00717)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-D20 - full reading 
AACCTTAGGA AGAGCCATGG GTGAAGAAGC TATAGTTCTG TATCCTGCAC 
CACCAATAGG TCACTTAGTG TCCATGGTTG AGTTAGGTAA AACCATCCTC 
TCCAAAAACC CATCTCTCTC CATCCACATT ATCTTAGTTC CACCGCCTTA 
TCAGCCGGAA TCAACCGCCA CTTACATCTC CTCCGTCTCC TCCTCCTTCC 
CTTCAATAAC CTTCCACCAT CTTCCCGCCG TCACACCGTA CTCCTCCTCC 
TCCACCTCTC GCCACCACCA CGAATCTCTC CTCCTAGAGA TCCTCTGTTT 
TAGCAACCCA AGTGTCCACC GAACTCTTTT CTCACTCTCT CGGAATTTCA 
ATGTCCGAGC AATGATCATC GATTTCTTCT GCACCGCCGT TTTAGACATC 
ACCGCTGACT TCACGTTCCC GGTTTACTTC TTCTACACCT CTGGAGCCGC 
ATGTCTCGCC TTTTCCTTCT ATCTCCCGAC CATCGACGAA ACAACCCCCG 
GAAAAAACCT CAAAGACATT CCTACAGTTC ATATCCCCGG CGTTCCTCCG 
ATGAAGGGCT CCGATATGCC TAAGGCGGTG CTCGAACGAG ACGATGAGGT 
CTACGATGTT TTTATAATGT TCGGTAAACA GCTCTCGAAG TCGTCAGGGA 
TTATTATCAA TACGTTTGAT GCTTTAGAAA ACAGAGCCAT CAAGGCCATA 
ACAGAGGAGC TCTGTTTTCG CAATATTTAT CCAATTGGAC CGCTCATTGT 
AAACGGAAGA ATCGAAGATA GAAACGACAA CAAGGCAGTT TCTTGTCTCA 
ATTGGCTGGA TTCGCAGCCG GAAAAGAGTG TTGTGTTTCT CTGTTTTGGA 
AGCTTAGGTT TGTTCTCAAA AGAACAGGTG ATAGAGATTG CTGTTGGTTT 
AGAGAAAAGT GGGCAGAGAT TCTTGTGGGT GGTCCGTAAT CCACCCGAGT 
TAGAAAAGAC AGAACTGGAT TTGAAATCAC TCTTACCAGA AGGATTCTTA 
AGCCGAACCG AAGACAAAGG GATGGTCGTG AAATCATGGG CTCCGCAAGT 
TCCGGTTCTG AATCATAAAG CAGTCGGGGG ATTCGTCACT CATTGCGGTT 
GGAATTCAAT TCTTGAAGCT GTTTGTGCTG GTGTGCCGAT GGTGGCTTGG 
CCGTTGTACG CTGAGCAGAG GTTTAATAGA GTGATGATTG TGGATGAGAT 
CAAGATTGCG ATTTCGATGA ATGAATCAGA GACGGGTTTC GTGAGCTCTA 
CAGAGGTGGA GAAACGAGTC CAAGAGATAA TTGGGGAGTG TCCGGTTAGG 
GAGCGAACCA TGGCTATGAA GAACGCAGCC GAATTAGCCT TGACAGAAAC 
TGGTTCGTCT CATACCGCAT TAACTACTTT ACTCCAGTCG TGGAGCCCAA 
AGTGATCTTT GAAATTAAGT CTTGCATCAA TTAATAACTT TGTAGTCTCT 
CAGAATCATG TCTTTGGGGG TTATTCGTTT TACTAGTTCA AAGTTATGTC 
TCTGAGACCG CAGATGGAAA GAACAATTTA TACC

Gene models with high sequence identity

  1. AT3G16520.3 [+] show detail - UDP-glucosyl transferase 88A1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther UDP-GLUCOSYLTRANSFERASE 4.4e-121
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 4.4e-121
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.6e-39
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
Gene3D no description 0.0000000000046
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.8e-29

See the detailed result >

AT3G16520.3

Model type
Protein coding
Short Description
UDP-glucosyl transferase 88A1
Computational Description
UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-D20 introduced

  • F06502 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

27 mutant lines found