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RAFL05-02-F02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00837)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-F02 - full reading 
ATTCAACACC AGCAAAATCC GCTTTGTTGC AGAGGATCAC AATCTAATGG 
CGATTCCAAT GTCCATGGCA ATGGCGACTC CTACAGATTC CGTGAGCAGA 
GTCTGGAGTA TGTCTTCTCT CAAATCAGCT CTTCCCTCCA CCGCATCACT 
CCGATTACCT TCCTCGTCTT CTCGCCGTCC GGTTACTCTT CGTCTCCCAA 
TCTCTTCTCC TTCACTCCCA TCTTTCTCCG GTCTCTCTCC GGTCAATCCT 
CTCCTCTCAA TCGGACTTCC AGATTGGCAA AGCTTTGAGA ATGGATTCAA 
AATTGTTGAC GGTGGTGGTC GTATCTACGC GATGAGACAC GGACGACGTG 
TTCCGAAGCT GAACAGACCA CCGGACCAGC GCAAAGCTCT TCTGCGAGGA 
CTCACGACTC AGCTTCTTAA GCATGGGAGA ATCAAGACGA CTCGAGCTAG 
AGCTAGTGCG ATGAGGAAGT TCGTTGACAA GATGATTACA TTGGCTAAAG 
ACGGTTCGTT GCACAAGCGA AGACAAGCCT TGGGATATAT CTACGAGAAA 
CAGATTGTTC ACGCTCTGTT TGCTGAGGTT CCTGATAGAT ACGGTGAGAG 
AAACGGTGGA TACACGAGGA TCATCAGAAC TCTTCCAAGG AGAGGTGATA 
ATGCTCCAAT GGCTTACATT GAGCTTGTCT AAGGTCAATA TCTCTTTTAT 
TTTGCTCAAT TGTTTCACTT TTGCTCTGTA ATATTGAAAA ACAGTTGTTG 
ATGCAGATAT GAGATCATTT TGTTTTGTGA GCTTCAATTG GC

Gene models with high sequence identity

  1. AT3G54210.1 [+] show detail - Ribosomal protein L17 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Ribosomal protein L17 1.8e-60
superfamily Ribosomal protein L17 1.3e-38
Gene3D Ribosomal protein L17 1.5e-43
HAMAP Ribosomal protein L17 26.201
HMMTigr Ribosomal protein L17 2.8e-59
HMMPfam Ribosomal protein L17 5.3e-36

See the detailed result >

AT3G54210.1

Model type
Protein coding
Short Description
Ribosomal protein L17 family protein
Computational Description
Ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: Ribosomal protein L17 family protein (TAIR:AT5G09770.1); Has 8019 Blast hits to 8019 proteins in 2737 species: Archae - 0; Bacteria - 5501; Metazoa - 121; Fungi - 128; Plants - 120; Viruses - 0; Other Eukaryotes - 2149 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-F02 introduced

  • F08316 - Specific phenotypes were NOT observed.
  • F11045 - Specific phenotypes were NOT observed.
  • F13931 - seed::increased size
  • F18922 - Specific phenotypes were NOT observed.
  • F19101 - Specific phenotypes were NOT observed.
  • F25604 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

9 mutant lines found