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RAFL05-02-G09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02417)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-G09 - full reading 
AGGAGAAGAA GTTAAAGCAA AACACATACA AACGCAGTCA CCTTCTCTAT 
CGCCTCCTTC TTCAATCTCA TCGCAATCAT GATCATATCA GAGACTAACC 
GCCGTGAGAT CTCCAAGTAC CTCTTCAAAG AGGGTGTTTT GTTTGCTAAA 
AAGGATTTCA ACTTACCACA ACATCCTTTG ATTGAGAGTG TTCCAAATCT 
GCAAGTTATC AAGTTGATGC AGAGTTTCAA ATCTAAGGAA TATGTGAGAG 
AGACCTTTGC TTGGATGCAT TACTACTGGT TCCTCACAAA TGAAGGTATT 
GACTTTCTCA GGACTTACCT TAATCTCCCA TCTGAGATTG TTCCTGCTAC 
TTTGAAGAAG CAACAGAAGC CTCTTGGTCG ACCTTTTGGA GGTGGTGGTG 
ACCGTCCCCG TGGCCCTCCT CGTGGTGATG GAGAGAGGAG GTTTGGTGAC 
AGAGATGGAT ACCGTGGAGG TCCTAAATCA GGTGGAGAGT ATGGTGACAA 
GGCTGGAGCA CCTGCTGATT ACCAGCCTGG CTTCAGGGGT GGAGCTGGTG 
GAGCTAGGCA AGGGTTTGGT CGTGGAGCTG GTGGTTTCGG TGGTGGTGCT 
GCTGGATCTG ATCTTCCTTG AAAAGGACTT TCTTGTTTCT TTTTGGTCTT 
ATTTAAGGTT ACATAGTACC TTTGATTTGA GAACGAATGT GTCTTTTGGA 
ACTTTGTTTC TTTCTCTAAA ACCATCTCAC AATATGATTG TTTTTTACGT 
TAGAATTTTA TGAAGAAATG TTGGATCGTG A

Gene models with high sequence identity

  1. AT5G41520.1 [+] show detail - RNA binding Plectin/S10 domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 40S RIBOSOMAL PROTEIN S10 2.3e-88
HMMPfam Plectin/S10, N-terminal 3.4e-41

See the detailed result >

AT5G41520.1

Model type
Protein coding
Short Description
RNA binding Plectin/S10 domain-containing protein
Computational Description
RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT4G25740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-G09 introduced

  • F11229 - seed::increased size / seed::increased length
  • F29414 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found