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RAFL05-02-G21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00842)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-G21 - full reading
AAAAACTCAC CGACGCGATC CGATCTCATC TCTCTCATTT CGAAACCATG 
GTTGAGCCGG CGAATACTGT TGGTCTTCCG GTGAACCCGA CTCCGTTGCT
GAAAGATGAG CTCGATATCG TGATTCCGAC TATCAGAAAC CTCGATTTCC
TCGAGATGTG GAGGCCTTTT CTTCAGCCTT ACCATCTGAT CATCGTCCAG
GACGGAGATC CATCGAAGAA GATCCATGTC CCTGAAGGTT ACGACTACGA
GCTCTACAAC AGGAACGACA TTAACCGAAT CCTCGGACCT AAGGCTTCTT
GTATCTCGTT TAAGGATTCT GCTTGTCGAT GCTTTGGGTA CATGGTGTCT
AAGAAGAAGT ATATCTTCAC CATTGATGAC GATTGCTTCG TTGCCAAGGA
TCCATCAGGC AAAGCAGTGA ACGCTCTTGA GCAACACATC AAGAACCTTC
TCTGCCCATC GTCTCCCTTT TTCTTCAACA CCTTGTATGA TCCTTACCGT
GAAGGTGCTG ATTTCGTCCG TGGATACCCT TTCAGTCTCC GTGAAGGTGT
TTCCACTGCT GTTTCCCATG GTCTTTGGCT CAACATCCCT GACTACGATG
CCCCGACCCA ACTCGTGAAG CCTAAGGAGA GGAACACCAG GTATGTGGAT
GCTGTCATGA CCATCCCAAA GGGAACACTT TTCCCAATGT GTGGTATGAA
CTTGGCTTTT GACCGTGATT TGATTGGCCC GGCTATGTAC TTTGGTCTCA
TGGGTGATGG TCAGCCTATT GGTCGTTACG ACGATATGTG GGCTGGTTGG
TGCATCAAGG TGATCTGTGA CCACTTGAGC TTGGGAGTGA AGACCGGTTT
ACCGTATATC TACCACAGCA AAGCGAGCAA CCCTTTTGTT AACCTGAAGA
AGGAATACAA GGGAATCTTC TGGCAGGAGG AGATCATTCC GTTCTTCCAG
AACGCAAAGC TATCGAAAGA AGCAGTAACT GTTCAGCAAT GCTACATTGA
GCTCTCAAAG ATGGTCAAGG AGAAGTTGAG CTCCTTAGAC CCGTACTTTG
ACAAGCTTGC AGATGCCATG GTTACATGGA TTGAAGCTTG GGATGAGCTT
AACCCACCAG CAGCCAGTGG CAAAGCTTGA GAGCAGTATG AGCCAAAAAG
AAAAAGCCAC CAAAGTTTTG GTTATTTTTA GCTCAAATTA TCGTTACTTT
TAAATTTCTG ATTTTACGAA CCTTTCTTGC TTTTTTTACA CATTTGAGTA
GTTTTCATCA TCAGTACTTT CTCATTGTCC GGTTATGGTT TTTGCATTTG
GTTTAAATAT CACCGGTTTA TTTATAAACA GTGGTGGATT AGTAGTACTA
TTTTCTGAGT TTTTTTCTTT GTTTCATTAA TAAAAAGGCC TTTTCATAGG
TGTTTGCAAC T

Gene models with high sequence identity

  1. AT5G15650.1 [+] show detail - reversibly glycosylated polypeptide 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Alpha-1,4-glucan-protein synthase, UDP-forming 1.3e-271
HMMPfam Alpha-1,4-glucan-protein synthase, UDP-forming 2.1e-186

See the detailed result >

AT5G15650.1

Model type
Protein coding
Short Description
reversibly glycosylated polypeptide 2
Curator Summary
Reversibly Glycosylated Polypeptide-2. Constitutive expression in tobacco impairs plant development and virus spread.
Computational Description
reversibly glycosylated polypeptide 2 (RGP2); FUNCTIONS IN: transferase activity, transferring hexosyl groups, glycogenin glucosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cytosolic ribosome, cell wall, membrane; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, leaf; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 1 (TAIR:AT3G02230.1); Has 259 Blast hits to 255 proteins in 45 species: Archae - 24; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-G21 introduced

  • F24226 - rosette leaf::dark green / rosette leaf::increased size / rosette leaf::present in greater numbers in organism / stem::increased thickness / stem::abnormal / cauline leaf::abnormal / stem::present in fewer numbers in organism / root::present in greater numbers in organism / rosette leaf::dark green / rosette leaf::dark green / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::increased thickness / stem::abnormal / cauline leaf::dark green / stem::present in fewer numbers in organism
  • F29332 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found