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  3. RAFL05-02-I10

RAFL05-02-I10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00791)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-I10 - full reading 
AATGGCTCTG TTTTAAAAAG GGCAAATTAG AGAGATTTCT CCTTCAATAA 
CAAAAAATCG CCAGCTTTAT CTCTCTCTTT TTCACATCCC ATGGCTAGAT 
GGTGACGACG ATTCACGCAT AAACTAGGGT TCCCCCACAA ATCATCTTAC 
ACGTATCCTC TATTCCTTCC TTCCTTTCTC CGTCATCATC ATTTTTCCCA 
CCGACAACAA TCTCTCGGAG TTTGGGTATT ATTACTTCTC TCATCAACCA 
ATTGTACCAC TAGATCTCCC AGATTCCTTC ATTATCTCTA TCAATAATGG 
CGTTGAAGTC TAGTTCTGCT GATGGTAAAA CCAGAAGCTC TGTTCAGATC 
TTCATTGTGT TTAGTTTATG TTGCTTCTTT TACATTTTGG GAGCATGGCA 
ACGAAGTGGT TTTGGTAAAG GAGACAGTAT TGCTCTTGAG ATGACCAACA 
GTGGAGCTGA TTGCAACATT GTTCCTAGCT TGAATTTCGA GACTCATCAC 
GCTGGCGAAT CAAGTCTTGT TGGTGCTTCT GAAGCTGCAA AGGTCAAGGC 
TTTCGAGCCC TGTGATGGTC GTTACACGGA TTACACTCCT TGTCAAGATC 
AGAGACGTGC CATGACTTTC CCGAGAGATA GTATGATTTA CCGAGAAAGG 
CATTGCGCTC CTGAGAATGA GAAGCTCCAT TGTCTTATAC CGGCTCCTAA 
AGGATATGTG ACACCTTTCT CTTGGCCTAA GAGTCGAGAC TATGTGCCTT 
ATGCTAATGC GCCGTATAAA GCATTGACTG TTGAGAAGGC TATTCAGAAT 
TGGATTCAGT ATGAGGGAGA CGTTTTTAGA TTCCCTGGTG GTGGAACTCA 
GTTCCCTCAA GGTGCTGATA AGTATATCGA TCAGCTTGCT TCCGTGATAC 
CTATGGAGAA CGGAACTGTT AGGACTGCTT TGGACACTGG TTGTGGGGTT 
GCAAGTTGGG GAGCGTACTT ATGGAGCAGA AATGTGCGTG CAATGTCTTT 
TGCACCAAGA GATTCACACG AGGCTCAGGT CCAGTTTGCT CTCGAGAGAG 
GTGTTCCCGC TGTTATTGGT GTTCTTGGTA CCATAAAGTT GCCATACCCA 
ACACGTGCTT TCGACATGGC TCATTGCTCT CGGTGTTTGA TTCCATGGGG 
AGCAAATGAT GGGATGTACT TGATGGAAGT TGACCGTGTG CTTAGACCTG 
GTGGGTACTG GATTCTGTCT GGTCCTCCAA TCAACTGGAA AGTCAACTAC 
AAGGCATGGC AACGTCCCAA GGAGGACCTT CAAGAGGAAC AAAGAAAGAT 
TGAGGAAGCT GCTAAACTTC TTTGTTGGGA GAAAAAGTAT GAACACGGTG 
AGATTGCAAT TTGGCAGAAG AGAGTCAATG ATGAGGCATG CCGATCAAGA 
CAAGATGATC CTAGAGCCAA TTTCTGCAAA ACCGATGATA CCGATGATGT 
CTGGTACAAG AAAATGGAGG CATGTATTAC ACCGTATCCG GAGACAAGTA 
GCTCAGATGA AGTAGCTGGT GGTGAGCTTC AGGCTTTCCC AGATAGGCTC 
AATGCAGTGC CGCCCAGGAT CTCTAGCGGT TCGATCTCTG GTGTTACTGT 
TGATGCCTAT GAAGACGATA ACAGACAGTG GAAAAAACAT GTGAAAGCCT 
ACAAGAGAAT CAACAGTCTA CTTGACACTG GAAGGTACCG TAACATCATG 
GACATGAACG CAGGGTTTGG TGGATTTGCT GCTGCTCTTG AATCCCAAAA 
GCTTTGGGTT ATGAATGTTG TTCCCACAAT TGCCGAAAAG AACAGACTCG 
GAGTTGTATA TGAACGAGGA CTCATCGGTA TCTACCATGA CTGGTGTGAG 
GCTTTCTCTA CATATCCAAG AACATATGAC CTGATCCACG CGAACCACCT 
CTTCAGTCTA TACAAGAACA AGTGCAATGC GGATGATATT CTTCTAGAGA 
TGGATAGAAT TCTCCGACCA GAAGGAGCGG TTATAATCCG GGATGATGTG 
GATACATTGA TCAAGGTGAA GAGAATCATC GCTGGAATGA GATGGGATGC 
GAAGCTTGTC GATCATGAGG ATGGTCCTTT AGTTCCTGAG AAGGTTTTGA 
TTGCCGTGAA GCAGTATTGG GTCACCAACT CCACCTCGAC TCACTGAAGT 
TACTTTATTT CCGGTGTGAC CTGACATTTT GATCAAATGA TAGAGCTTTC 
GTCCTTAGGG AATGTGAGAG AGCTGCAAAT CTTGTCTTTA AACACTTTTT 
GAAGTATCTA TTTATTGATG TTATAGTTTA TTTTTGTTTC CCAAAC

Gene models with high sequence identity

  1. AT1G26850.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF248, methyltransferase putative 8.2e-232
Gene3D no description 0.0000024
superfamily S-adenosyl-L-methionine-dependent methyltrans 8.1e-28
superfamily S-adenosyl-L-methionine-dependent methyltrans 0.000000000000042

See the detailed result >

AT1G26850.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G18030.1); Has 1056 Blast hits to 1041 proteins in 100 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 923; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-I10 introduced

  • F15150 - Specific phenotypes were NOT observed.
  • F19001 - Specific phenotypes were NOT observed.
  • F22844 - stem::decreased thickness / stem::present in greater numbers in organism / stem::abnormal / rosette leaf::desaturated green / rosette leaf::abnormal / stem::desaturated green / cauline leaf::desaturated green

Mutant lines with disrupted or induced

4 mutant lines found