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  3. RAFL05-02-I23

RAFL05-02-I23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00720)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-I23 - full reading 
ATAAAAAGTA GTACTCGTGT CTTACTCGTG CCAGCCACTC GCATTTCTCC 
AGATTTTATT ATCCTTCCTC GAAACAAGAG CTTAGCTAAG ATGACGAAGA 
ACTACCCAAC CGTGAGCGAA GATTACAAGA AGGCTGTTGA GAAGTGCAGG 
AGGAAGCTCA GAGGTTTGAT CGCTGAGAAG AACTGTGCAC CCATCATGGT 
CCGACTCGCA TGGCACTCTG CTGGAACTTT CGATTGTCAA TCAAGGACTG 
GAGGTCCATT CGGAACAATG AGGTTTGACG CTGAGCAAGC TCATGGAGCC 
AACAGTGGTA TCCACATTGC TCTTAGGTTG TTGGACCCCA TCAGGGAGCA 
ATTCCCTACC ATCTCTTTTG CTGATTTCCA TCAGCTTGCT GGTGTTGTGG 
CCGTTGAAGT TACTGGTGGC CCTGACATTC CTTTCCACCC TGGAAGAGAG 
GACAAGCCCC AACCACCTCC AGAGGGTCGT CTTCCTGATG CTACCAAGGG 
TTGTGACCAT TTGAGAGATG TCTTTGCTAA GCAGATGGGC TTATCTGACA 
AAGACATTGT CGCTTTATCT GGTGCCCACA CTCTGGGACG ATGCCACAAG 
GATAGGTCTG GCTTCGAAGG TGCATGGACA TCAAACCCTC TAATCTTCGA 
CAACTCTTAC TTCAAGGAAC TCTTGAGCGG AGAGAAGGAA GGCCTTCTTC 
AGCTTGTCTC TGACAAAGCA CTATTGGACG ACCCTGTTTT CCGTCCTTTG 
GTCGAGAAAT ACGCTGCTGA TGAAGATGCC TTTTTCGCTG ATTACGCTGA 
GGCCCACATG AAGCTTTCTG AGCTTGGGTT TGCTGATGCT TAAGCTGTGA 
CGTATGCTCT GTGTGTGTGT GTGTGTCTCC CCGAGAGTCA TGGCTGTTTT 
TGGTTGGGGG CTGGAGGGGT CGCATTGCAT TTGAACTTTG TCATATGATT 
GCTTAATGTA CTCTCGGATT TACGTATCTG TTTTTTTCGG TGGGTTGCGA 
TTTGAACACA TCCGTTGCGC TTTTGCTGCT TAGACACATT AATAAAATTA 
ATTTCTCCC

Gene models with high sequence identity

  1. AT1G07890.1 [+] show detail - ascorbate peroxidase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Haem peroxidase 2.3e-87
HMMPfam Haem peroxidase, plant/fungal/bacterial 9.7e-47
ProfileScan Haem peroxidase, plant/fungal/bacterial 16.222
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Plant ascorbate peroxidase 1e-121
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-26
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-26
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-26
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-26
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-26
PatternScan Peroxidases heam-ligand binding site 0
PatternScan Peroxidase, active site 0
Gene3D no description 7.4e-45
Coil coiled-coil 0

See the detailed result >

AT1G07890.1

Model type
Protein coding
Short Description
ascorbate peroxidase 1
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Computational Description
ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane, chloroplast stroma; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75; Bacteria - 2912; Metazoa - 21; Fungi - 794; Plants - 3291; Viruses - 0; Other Eukaryotes - 1718 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-I23 introduced

  • F26921 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found