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  3. RAFL05-02-M09

RAFL05-02-M09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00699)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-M09 - full reading 
TGGAGCTTCA TTTTGCCTTT GTATACTTTT GAGTAGATAG ATAGACAGAC 
TATAGTCTAT ATAAGATCCA TGTGACAATA GTTAAAATCC TCATATTTTC 
ATTTCCAATG GAGCGCAAAG TCTTGAATAC CCTCGCCTTC TCCGTCTTTG 
CCGTTCTCTT CTTCACCTCC TCTGCTTCTT CCCAATACCA AACTCTTGTC 
GTCAACACTC TTCCTTCTTC CGCAACACTC TCATGGCCCG AGTCCGAATC 
TTTAACTGAT GAATCTTTAT CCGAGTCCAC AACTTCACTC TCTGTCCATT 
TATCACACGT GGATGCTCTG TCTTCCTTCT CCGACGCATC TCCGGCGGAC 
CTCTTCAACC TCCGTCTCCA ACGAGACTCT CTCCGCGTCA AATCTATTAC 
CAGCCTCGCC GCCGTATCAA CCGGACGAAA TGCTACGAAA AGAACTCCAC 
GTACCGCCGG TGGATTTAGC GGCGCAGTTA TCTCTGGCCT CTCACAAGGA 
AGCGGAGAGT ATTTTATGAG GTTAGGTGTT GGAACTCCGG CGACTAACGT 
TTACATGGTG CTCGACACAG GAAGCGACGT CGTTTGGCTC CAATGCTCTC 
CTTGCAAAGC CTGTTACAAC CAGACCGACG CCATTTTTGA CCCGAAGAAA 
TCCAAAACTT TCGCCACCGT ACCATGTGGA TCTCGCCTTT GCCGGAGACT 
AGACGACTCG TCGGAATGTG TCACTCGTCG AAGCAAGACT TGTCTCTACC 
AAGTATCGTA CGGTGACGGA TCATTCACCG AAGGAGATTT CTCAACTGAA 
ACGCTGACGT TTCATGGAGC GCGTGTTGAT CACGTGCCGT TAGGATGCGG 
TCACGATAAC GAAGGCTTGT TCGTTGGTGC GGCTGGGCTT TTGGGCTTGG 
GCCGTGGTGG GTTATCTTTC CCGTCGCAGA CGAAAAACCG TTATAACGGA 
AAATTCTCTT ACTGTTTGGT TGACCGGACG AGTTCCGGTT CTTCTTCTAA 
ACCACCGTCA ACAATCGTGT TTGGAAACGC CGCCGTTCCG AAAACCTCTG 
TTTTCACGCC GTTACTAACG AACCCGAAAC TCGACACGTT TTATTACTGC 
AGCTTCTTGG AATCAGCGTT GGTGGTTCGC GCGTTCCCGG CGTTTCGGAG 
TCGCAGTTCA AGCTTGACGC CACCGGAAAC GGCGGTGTCA TTATAGATTC 
CGGTACTTCG GTTACTCGGC TGACGCAACC TGCTTACGTA GCGCTTAGAG 
ACGCTTTTAG ACTTGGTGCT ACGAAGCTGA AACGTGCTCC ATCGTATTCT 
TTGTTCGACA CGTGTTTTGA TCTCTCGGGA ATGACGACTG TGAAGGTTCC 
GACGGTTGTG TTTCATTTCG GAGGCGGAGA GGTTTCGCTT CCGGCGAGTA 
ATTATCTGAT CCCGGTTAAC ACTGAAGGAC GGTTCTGTTT TGCGTTTGCC 
GGAACTATGG GGAGTTTGTC AATCATTGGA AACATACAGC AACAAGGTTT 
CCGGGTCGCT TATGACTTGG TCGGGTCACG GGTCGGGTTT TTGTCTCGCG 
CGTGTTAGAT TTTGAGCTTG AGTTGACTGA TTTATTCCCA AAGACTTTTT 
GGGAGAAAAT TGACAAAGCA AATTATCAAA CATTGTTATC ATCATCGACT 
ATCATACTAC TCATTAGTCA TCATTCATGA AGATCCCTAG ATTAAATATT 
GTACTAGTAC TTCTGTACTG TCAAAAGTCA AAGAGAAGTG AATCTTAAAG 
GTGCTTTTGT CCTTTGAAAT TTCTTAAACC

Gene models with high sequence identity

  1. AT3G61820.1 [+] show detail - Eukaryotic aspartyl protease family protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 5.4e-75
HMMPanther Peptidase A1 5.4e-75
HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 5.7e-51
HMMPanther Peptidase A1 5.7e-51
Gene3D Peptidase aspartic, catalytic 7.8e-39
Gene3D Peptidase aspartic, catalytic 4.1e-32
superfamily Peptidase aspartic 4.3e-38
superfamily Peptidase aspartic 4.3e-55
HMMPfam Peptidase A1 1.9e-07
HMMPfam Peptidase A1 4.7e-13

See the detailed result >

AT3G61820.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G01300.1); Has 3770 Blast hits to 3746 proteins in 344 species: Archae - 0; Bacteria - 0; Metazoa - 956; Fungi - 705; Plants - 1946; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-M09 introduced

  • F08622 - Specific phenotypes were NOT observed.
  • F12919 - Specific phenotypes were NOT observed.
  • F24136 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found