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RAFL05-02-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00713)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-M11 - full reading 
AAAATTTTCC CCATTAAACA AAAAAAAATC AAATCTCTCT CTTTCTCTCT 
CTAATGGCGG CGACATTAGG CAGAGACCAG TATGTGTACA TGGCGAAGCT 
CGCCGAGCAG GCGGAGCGTT ACGAAGAGAT GGTTCAATTC ATGGAACAGC 
TCGTTACAGG CGCTACTCCA GCGGAAGAGC TCACCGTTGA AGAGAGGAAT 
CTCCTCTCTG TTGCTTACAA AAACGTGATC GGATCTCTAC GCGCCGCCTG 
GAGGATCGTG TCTTCGATTG AGCAGAAGGA AGAGAGTAGG AAGAACGACG 
AGCACGTGTC GCTTGTCAAG GATTAAAGAT CTAAAGTTGA GTCTGAGCTT 
TCTTCTGTTT GCTCTGGAAT CCTTAAGCTC CTTGACTCGC ATCTGATCCC 
ATCTGCTGGA GCGAGTGAGT CTAAGGTCTT TTACTTGAAG ATGAAAGGTG 
ATTATCATCG GTACATGGCT GAGTTTAAGT CTGGTGATGA GAGGAAAACT 
GCTGCTGAAG ATACCATGCT CGCTTACAAA GCAGCTCAGG ATATCGCAGC 
TGCGGATATG GCACCTACTC ATCCGATAAG GCTTGGTCTG GCCCTGAATT 
TCTCAGTGTT CTACTATGAG ATTCTCAATT CTTCAGACAA AGCTTGTAAC 
ATGGCCAAAC AGGCTTTTGA GGAGGCCATA GCTGAGCTTG ACACTCTGGG 
AGAGGAATCC TACAAAGACA GCACTCTCAT AATGCAGTTG CTGAGGGACA 
ATTTAACCCT TTGGACCTCC GATATGCAGG AGCAGATGGA CGAGGCCTGA 
GGATCTAGAT GAAGGGGGGG AGGGTTGTTA CGCGATGTTT CTGCCACCAA 
ATCGATCTCA AAATCCCCAT AACCTTTGCT CAAAAACTGT GAAAAAAGAT 
TGAAGTGTTT ATGATGATTA TGATTGTGCA CAGCTTGATG ATTTATCTAC 
TCTACTAAAC CTCTGTGCTC TTAATATTTA TTGTCTCGAC TCTGCTCAAG 
CCTTAAAAAC ATCTTTCTCC TTAAGGCTCC TCTGGTTAAA TTATGATCCT 
TCTACTGTAT CGTCAAAATC AAGTTGGAAC CCAAAATTCG TGGATT

Gene models with high sequence identity

  1. AT5G10450.1 [+] show detail - G-box regulating factor 6
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMSmart 14-3-3 protein 0.00012
HMMSmart 14-3-3 protein 6.8e-82
PatternScan 14-3-3 protein 0
PatternScan 14-3-3 protein 0
HMMPfam 14-3-3 protein 9.8e-31
HMMPfam 14-3-3 protein 4.9e-74
FPrintScan 14-3-3 protein 2.6e-58
FPrintScan 14-3-3 protein 2.6e-58
FPrintScan 14-3-3 protein 2.6e-58
FPrintScan 14-3-3 protein 2.6e-58
superfamily 14-3-3 protein 1.4e-26
superfamily 14-3-3 protein 9.4e-68
HMMPanther 14-3-3 protein 5e-53
HMMPanther 14-3-3 protein 6.6e-123
Coil coiled-coil 0
Coil coiled-coil 0
Gene3D 14-3-3 protein 1.2e-23
Gene3D 14-3-3 protein 3.7e-68

See the detailed result >

AT5G10450.1

Model type
Protein coding
Short Description
G-box regulating factor 6
Curator Summary
Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.
Computational Description
G-box regulating factor 6 (GRF6); FUNCTIONS IN: protein phosphorylated amino acid binding; INVOLVED IN: brassinosteroid mediated signaling pathway, response to cadmium ion, defense response to bacterium, phosphorylation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 8 (TAIR:AT5G65430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-M11 introduced

  • F03148 - Specific phenotypes were NOT observed.
  • F05306 - Specific phenotypes were NOT observed.
  • F09423 - Specific phenotypes were NOT observed.
  • F26041 - Specific phenotypes were NOT observed.
  • F29732 - seed::increased width

Mutant lines with disrupted or induced

5 mutant lines found