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  3. RAFL05-02-M17

RAFL05-02-M17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00715)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-M17 - full reading 
GTGTGAAAAA TTCTTCTTCT TCTTCTTCTC AGCGATTGAA TCGAACCAAG 
AGCGAAAATG AGAAATTTCA GTGTCTTCGA GAGATTCTCT AAAGCTTTTA 
AAGATCATCC TTCTCTCACC AGGATTCTCG TCGTCTCCAC GATCAGTGGT 
GGTGGACTTA TAGCGTATTC TGAGGCAAAC GCATCTTATG GAGCAAATGG 
TGGTGCTGTT GTTGAAACTG GAACCAAGAA GAAGAAGGTG GTGCTGCTCG 
GAACTGGATG GGCTGGAACT AGTTTCTTGA AGAATTTGAA CAATTCTCAA 
TATGAGGTTC AGATTATATC GCCTCGGAAC TACTTTGCTT TCACTCCTTT 
ACTACCTAGT GTTACTTGTG GAACTGTTGA AGCTCGTAGT GTTGTTGAGC 
CTATTCGAAA CATTGGAAGA AAGAATGTTG ATACTTCTTA CTTGGAGGCA 
GAATGTTTCA AAATTGATCC AGCTAGCAAG AAGGTTTACT GCCGATCCAA 
ACAAGGCCTT AGTTCAAATG GAAAGAAAGA ATTTTCTGTT GACTATGACT 
ACCTTGTAAT TGCTACTGGA GCTCAGTCTA ACACCTTTAA CATACCCGGA 
GTGGAGGAGA ACTGTCATTT TCTGAAAGAG GTTGAAGATG CTCAGAGAAT 
CCGTAAAACT GTAATTGATT CCTTTGAGAA GGCAAGTCTA CCAGAACTAA 
GCGATGAAGA GAGAAAGAGA ATCCTGCATT TTGTGGTTGT TGGTGGTGGG 
CCAACAGGTG TTGAGTTTGC CGCTGAGCTA CATGATTTTG TTACTGAGGA 
TCTAGTCAGT CTCTATCCTA GAGCCAAGGG TTCAGTGCGA ATCACGCTTC 
TGGAGGCCGC AGACCACATC CTGACCATGT TTGACAAGAG AATCACTGAG 
TTTGCCGAAG AAAAGTTTAG CAGAGATGGA ATTGATGTGA AACTTGGCTC 
GATGGTAACT AAAGTGAATG AGAAAGATAT ATCTGCTAAA ACCAAAGGAG 
GAGAGGTTTC CTCGATTCCT TATGGAATGA TTGTCTGGTC AACTGGTATT 
GGAACTCGTC CTGTGATAAA AGATTTTATG AAACAAATTG GTCAGGGTAA 
TAGACGAGCT CTGGCAACTG ATGAATGGCT TCGCGTAGAA GGAACTGATA 
ATATATATGC CCTTGGTGAT TGCGCAACCA TTAACCAGCG CAAAGTCATG 
GAAGATGTTT CTGCTATTTT TAGCAAAGCA GACAAAGACA AGTCTGGGAC 
ACTGACTCTC AAAGAGTTCC AAGAAGCAAT GGATGACATT TGTGTTAGAT 
ACCCTCAAGT GGAGCTCTAC TTGAAGAGTA AACGTATGCG TGGCATTGCA 
GATCTTCTTA AAGAAGCCGA AACTGATGAT GTATCTAAGA ATAACATTGA 
ACTGAAGATC GAAGAGTTCA AATCGGCTCT ATCTCAGGTT GACTCACAAG 
TGAAGTTTCT TCCAGCTACT GCACAGGTTG CTGCGCAGCA AGGTGCTTAC 
CTAGCTAAAT GCTTTGACCG TATGGAAGAG TGTGAGAAGA GTCCAGAAGG 
TCCCATTAGG ATGAGAGGAG AAGGTCGTCA CCGTTTCCGC CCCTTCAGGT 
ATAGGCATCT GGGACAATTT GCACCACTGG GAGGGGAGCA AACGGCAGCA 
CAACTTCCAG GAGATTGGGT TTCTATTGGA CACAGCAGCC AGTGGCTCTG 
GTACTCCGTC TACGCCAGTA AGCAAGTGAG CTGGCGTACG AGAGTGCTTG 
TGGTTTCAGA TTGGATGAGG CGTTTCATCT TTGGTAGAGA TTCCAGTAGC 
ATCTGATTTT CAACCTCCAA GGCTCCAATA CACATATCTC TCTCTCTCAC 
GAGTTACACT AACTTTCTCA TGAGGAAAAA GTTTTGATTC ACTTTAAAAA 
ATGGAAATCC AAATCGGCTT TTATATTTTG TAATAAAATA ATGACCACAA 
GTAACGAGGA GAGATTGCCT CGTTTCGTTG GCCATATCGT TGCTGATCCC 
GAGGATTGTA CTCTCTGTTT TTCTCTGCAA ATATTCTTCA GGTTGGCTTT 
TTACCTTTAT ATCCTCTTTT TTTGTAAGCT TTTTCCTCAA ATTTTGTTTA 
GTACGATGAC TAAAACTGAG TTTTGTTATT TCTTGCTCTC TGTTTTTCTC 
CTTCAATATC ATGGTCTTTT TTTCTTTCC

Gene models with high sequence identity

  1. AT4G05020.1 [+] show detail - NAD(P)H dehydrogenase B2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther NADH DEHYDROGENASE-RELATED 1.1e-278
HMMPanther NADH DEHYDROGENASE-RELATED 1.1e-278
PatternScan EF-Hand 1, calcium-binding site 0
Gene3D no description 2.5e-13
Gene3D no description 1.9e-23
Coil coiled-coil 0
ProfileScan EF-HAND 2 13.147
HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 6.3e-38
HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 3.8e-13
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.9e-05
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.9e-05
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.9e-05
superfamily FAD/NAD(P)-binding domain 4.9e-27
superfamily EF-hand 3.9e-06
HMMSmart Calcium-binding EF-hand 0.00039

See the detailed result >

AT4G05020.1

Model type
Protein coding
Short Description
NAD(P)H dehydrogenase B2
Computational Description
NAD(P)H dehydrogenase B2 (NDB2); FUNCTIONS IN: disulfide oxidoreductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, extrinsic to mitochondrial inner membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B3 (TAIR:AT4G21490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-M17 introduced

  • F27248 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found