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  3. RAFL05-02-N02

RAFL05-02-N02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00723)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-N02 - full reading 
ATCCTCTCCG ATCGTTGGCC TCCTGTTTCC GTTTTACTCG ACATCGTTCC 
GACGACTTTT GACCTGGAAT CGACGCAGTG ACTTCAATTC AACTATTGCA 
CTTGGTTTGT TGGCAATGGA CAAAGGAGCA CCTCCTAGTA TTTTTGTGAA 
TGATGGGTCA TTCATGGAAA GATTCAGACA GCTTCAACAG GAGAAAGATA 
AAGACAAGGA TAAGGTTGTC CAAGTTGAGG ATTCTAAGCC GGTGAAGATT 
ATATCAAATC CCAAACCTGC TGCTAATAAA ATTTCCATTG GATTAAAGCC 
CAATGATGCC CAGAAGAAAG GTGGTAAGCT TGCTTTCAGC TTGAAGCAAA 
AGTCTAAGCT TCTTGCACCT CCTGTGAAGC TTGGTACAGA AGAAGATGAG 
GATGATGAGG ATGTTAAACA TGAACAAGGC TTTGGATCCG TAAAGCGTCA 
AAAGTTAGAG CAGAGAGACA CACCTGTAAA GTCAGCAAAA GTATCGGATG 
TTGCACCACC TCCGCCCAGT GATCCTACTG TGAAGAAAGT TGCTGATAAA 
CTAGCAAGTT TTGTTGCTAA GCATGGAAGG CCATTTGAGC ACATTACACG 
GCAAAAGAAT CCTGGGGATA CACCATTTAA ATTTCTTTTT GACGAGAACT 
GTGCGGACTA CAAGTACTAT GTATTCAGGC TGGCTGAAGA GGAAAAATTA 
ATTTCACAAA CCAAGGATTC TGGTGTACTT CACAGTGGTG ATGCAGGCTC 
GCGAACGTCC ACAGCAGCAA TCCCTTTGCA AAAGCCAGCT TATCAACAAA 
CAGGATATCA GATCCCTGCC TCAGCTCTCT ATGATACTCC TGTGGAACCT 
GGAGCTTCTT CTAGATCTGC TCAGGCATCA ATTACAAGAC CCAGCGACAG 
TGACTCCTTT AGTGGGCCGA GGGGTGCAGA CCCTCTATCA ATGATGGAGT 
TTTACATGAA GAAGGCTGCC CAAGAAGAGA AAATGAGACG TCCTAGGCAG 
TCAAAAGACG AAATGCCTCC ACCAGCTTCC CTTCAAGGCC CATCTGAAAC 
TTCCTCCACA GACCCTGGAA AGAGAGGTCA TCACATGGGT GATTATATCC 
CACTTGAGGA GCTAGATAAG TTCCTTTCAA AGTGCAATGA CGCAGCTGCA 
CAAAAAGCCA CAAAGGAGGC TGCTGAGAAA GCGAAGATCC AAGCAGATAA 
TGTTGGACAT AAACTCTTGT CAAAAATGGG TTGGAAAGAA GGTGAAGGTA 
TAGGAAGCTC CAGAAAGGGT ATGGCAGACC CTATAATGGC AGGCGATGTA 
AAGACAAACA ACTTGGGAGT TGGTGCTTCC GCTCCAGGAG AAGTCAAGCC 
TGAGGATGAT ATATACGAGC AGTACAAGAA GCGGATGATG CTGGGTTACA 
AACACAGACC CAATCCACTG GGAAATCCCA GGAAGGCGTA TTACTAAGGA 
TCAAATCAAT GTGTTATGCG CAATTATTAT CTTTGGTTCA CCTCAGCACC 
GTCTGAGCTT TGCTTTTCTA TTATAAAGAA TGTTCAAGCT TTTAGATTAC 
TGATATATTG AAGTGTTGGT ATGCATTGAA TTTGCGTTTC AGTGTGCAAA 
TAGATCTCTT TGACAGACAT ATCAGTTGAA ATACAATGGA TTTGTTATTG 
CC

Gene models with high sequence identity

  1. AT3G52120.1 [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containin...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart SWAP/Surp 4.9e-17
HMMSmart D111/G-patch 3.6e-17
HMMPfam D111/G-patch 0.00000000000038
HMMPfam SWAP/Surp 0.000000000032
superfamily Surp module (SWAP domain; Pfam 01805) 7e-18
Coil coiled-coil 0
HMMPanther ARGININE/SERINE RICH SPLICING FACTOR SF4/14 1.1e-210
ProfileScan SWAP/Surp 12.903
ProfileScan D111/G-patch 17.007

See the detailed result >

AT3G52120.1

Model type
Protein coding
Short Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein
Computational Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); Has 1460 Blast hits to 1340 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 1005; Fungi - 124; Plants - 274; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-N02 introduced

  • F09206 - rosette leaf::variegated / rosette leaf::abnormal / cauline leaf::epinastic / stem::abnormal
  • F10430 - seed::increased size
  • F17711 - Specific phenotypes were NOT observed.
  • F22706 - Specific phenotypes were NOT observed.
  • F22931 - seed::increased size / seed::increased length
  • F23532 - Specific phenotypes were NOT observed.
  • F23741 - Specific phenotypes were NOT observed.
  • F26840 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found