1. Home
  2. Full-length cDNAs
  3. RAFL05-02-N23

RAFL05-02-N23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07233)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-N23 - full reading 
ACACTCCTTA TCTTCTTCAT TCCTCCATCC TATTTTTCTT CTTCGCCAAA 
GTGTTATTCC TCAACTTTAT ATATTACACA AATGTCTTTA GCCGCGGATA 
ATGTGTTGTT GGTGGAAGAA GGAAGGCCAG CCACAGCGGA ACATCCATCG 
GCCGGACCGG TTTATCGATG TAAATACGCT AAAGATGGCC TCCTCGATCT 
CCCTACCGAT ATTGATTCTC CTTGGCAGTT CTTTAGTGAG GCTGTGAAGA 
AATATCCGAA TGAGCAAATG TTGGGCCAAC GCGTAACGAC TGATTCTAAG 
GTCGGTCCAT ACACGTGGAT CACATATAAG GAAGCGCACG ACGCTGCAAT 
TCGGATTGGA TCAGCAATCA GAAGCCGAGG CGTTGATCCG GGACACTGTT 
GTGGTATTTA CGGAGCTAAT TGTCCAGAAT GGATTATTGC AATGGAGGCC 
TGCATGAGCC AAGGGATCAC CTACGTGCCT CTATACGATT CTTTAGGCGT 
AAACGCAGTT GAATTCATCA TCAACCACGC CGAGGTTTCG CTAGTATTTG 
TTCAAGAGAA GACAGTTTCA TCGATCTTAT CGTGCCAAAA GGGATGTTCT 
TCGAATTTGA AGACTATTGT GAGCTTCGGG GAAGTCTCGA GTACACAAAA 
GGAAGAAGCT AAGAACCAAT GTGTTTCTTT ATTTTCATGG AATGAGTTCT 
CACTAATGGG AAACTTAGAT GAGGCAAATC TACCTCGTAA GCGAAAGACA 
GACATCTGCA CAATAATGTA CACAAGCGGG ACGACTGGAG AACCCAAAGG 
TGTAATCTTA AACAACGCAG CAATTTCGGT CCAGGTTTTA TCCATAGACA 
AAATGCTTGA AGTCACTGAT CGATCGTGTG ACACGAGCGA TGTGTTCTTC 
TCGTACTTGC CATTAGCACA TTGCTATGAT CAAGTCATGG AGATTTACTT 
TTTATCTAGA GGCTCCTCTG TTGGATACTG GCGTGGCGAC ATTCGGTACC 
TGATGGATGA TGTTCAAGCT CTTAAACCTA CTGTGTTTTG CGGTGTTCCA 
CGAGTTTACG ACAAACTATA TGCCGGTATA ATGCAAAAAA TATCAGCTAG 
TGGCTTGATA CGCAAGAAAC TGTTTGATTT TGCTTATAAC TACAAATTGG 
GAAATATGAG AAAAGGATTC TCTCAAGAAG AAGCTTCTCC TCGTCTAGAC 
AGACTTATGT TCGATAAGAT AAAAGAAGCA TTAGGAGGAA GAGCTCATAT 
GTTGTTATCA GGAGCAGCGC CTCTACCTCG TCATGTAGAG GAGTTCTTGA 
GAATCATTCC TGCCTCTAAT CTCTCTCAAG GTTATGGATT GACTGAGAGT 
TGTGGGGGAA GCTTCACGAC CTTAGCCGGA GTATTTTCTA TGGTGGGGAC 
AGTGGGTGTG CCAATGCCCA CGGTGGAGGC AAGGCTAGTG TCCGTACCAG 
AGATGGGTTA CGACGCCTTT TCCGCTGACG TGCCGAGAGG AGAGATTTGT 
CTTAGAGGAA ATTCAATGTT TTCTGGTTAC CATAAAAGAC AAGATCTAAC 
TGATCAAGTC CTAATCGATG GATGGTTCCA CACAGGAGAT ATTGGAGAAT 
GGCAAGAAGA TGGATCAATG AAGATCATCG ATAGGAAGAA GAACATCTTC 
AAGTTGTCTC AAGGTGAATA TGTTGCTGTT GAAAACCTCG AAAACACTTA 
CTCAAGATGT CCCCTCATTG CTCAGATATG GGTCTATGGC AACAGCTTCG 
AGTCATTTTT GGTAGGTGTG GTTGTACCTG ATAGAAAAGC TATTGAAGAT 
TGGGCTAAAC TCAATTACCA ATCTCCCAAT GATTTCGAAT CTCTATGTCA 
AAATCTCAAA GCTCAAAAAT ACTTCTTGGA TGAGCTTAAC TCTACCGCAA 
AGCAATATCA ACTTAAAGGA TTTGAAATGT TAAAAGCTAT TCATTTAGAA 
CCAAACCCTT TTGATATTGA AAGAGATCTT ATTACTCCAA CTTTCAAGCT 
GAAAAGGCCA CAGCTCCTCC AACATTACAA GGGCATAGTT GATCAACTTT 
ATTCAGAAGC AAAGAGGTCC ATGGCATAGA TAATTAGATA CCGATCGGCT 
ATTCATTTTC TGATGCTATT TGGGTTTGTA TGATATGTTA CAAAATTGTG 
TTCGGATCCT CTCATCATGT GATTCTTGTT ACACTAAATT TATAGTTTGG 
AAACTATATA TATACTATTA AGCAACGTTT ACG

Gene models with high sequence identity

  1. AT1G49430.1 [+] show detail - long-chain acyl-CoA synthetase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam AMP-dependent synthetase/ligase 3.1e-102
Gene3D no description 5.6e-30
Gene3D no description 1.8e-05
Gene3D no description 3.5e-17
PatternScan AMP-binding, conserved site 0
HMMPanther LONG-CHAIN-FATTY-ACID COA LIGASE 6.3e-289
HMMPanther ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBE 6.3e-289
superfamily Acetyl-CoA synthetase-like 5.9e-117

See the detailed result >

AT1G49430.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 2
Curator Summary
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational Description
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-N23 introduced

  • F01618 - Specific phenotypes were NOT observed.
  • F19621 - Specific phenotypes were NOT observed.
  • F26425 - Specific phenotypes were NOT observed.
  • F27519 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found