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  3. RAFL05-02-N23

RAFL05-02-N23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07233)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-N23 - full reading
ACACTCCTTA TCTTCTTCAT TCCTCCATCC TATTTTTCTT CTTCGCCAAA 
GTGTTATTCC TCAACTTTAT ATATTACACA AATGTCTTTA GCCGCGGATA
ATGTGTTGTT GGTGGAAGAA GGAAGGCCAG CCACAGCGGA ACATCCATCG
GCCGGACCGG TTTATCGATG TAAATACGCT AAAGATGGCC TCCTCGATCT
CCCTACCGAT ATTGATTCTC CTTGGCAGTT CTTTAGTGAG GCTGTGAAGA
AATATCCGAA TGAGCAAATG TTGGGCCAAC GCGTAACGAC TGATTCTAAG
GTCGGTCCAT ACACGTGGAT CACATATAAG GAAGCGCACG ACGCTGCAAT
TCGGATTGGA TCAGCAATCA GAAGCCGAGG CGTTGATCCG GGACACTGTT
GTGGTATTTA CGGAGCTAAT TGTCCAGAAT GGATTATTGC AATGGAGGCC
TGCATGAGCC AAGGGATCAC CTACGTGCCT CTATACGATT CTTTAGGCGT
AAACGCAGTT GAATTCATCA TCAACCACGC CGAGGTTTCG CTAGTATTTG
TTCAAGAGAA GACAGTTTCA TCGATCTTAT CGTGCCAAAA GGGATGTTCT
TCGAATTTGA AGACTATTGT GAGCTTCGGG GAAGTCTCGA GTACACAAAA
GGAAGAAGCT AAGAACCAAT GTGTTTCTTT ATTTTCATGG AATGAGTTCT
CACTAATGGG AAACTTAGAT GAGGCAAATC TACCTCGTAA GCGAAAGACA
GACATCTGCA CAATAATGTA CACAAGCGGG ACGACTGGAG AACCCAAAGG
TGTAATCTTA AACAACGCAG CAATTTCGGT CCAGGTTTTA TCCATAGACA
AAATGCTTGA AGTCACTGAT CGATCGTGTG ACACGAGCGA TGTGTTCTTC
TCGTACTTGC CATTAGCACA TTGCTATGAT CAAGTCATGG AGATTTACTT
TTTATCTAGA GGCTCCTCTG TTGGATACTG GCGTGGCGAC ATTCGGTACC
TGATGGATGA TGTTCAAGCT CTTAAACCTA CTGTGTTTTG CGGTGTTCCA
CGAGTTTACG ACAAACTATA TGCCGGTATA ATGCAAAAAA TATCAGCTAG
TGGCTTGATA CGCAAGAAAC TGTTTGATTT TGCTTATAAC TACAAATTGG
GAAATATGAG AAAAGGATTC TCTCAAGAAG AAGCTTCTCC TCGTCTAGAC
AGACTTATGT TCGATAAGAT AAAAGAAGCA TTAGGAGGAA GAGCTCATAT
GTTGTTATCA GGAGCAGCGC CTCTACCTCG TCATGTAGAG GAGTTCTTGA
GAATCATTCC TGCCTCTAAT CTCTCTCAAG GTTATGGATT GACTGAGAGT
TGTGGGGGAA GCTTCACGAC CTTAGCCGGA GTATTTTCTA TGGTGGGGAC
AGTGGGTGTG CCAATGCCCA CGGTGGAGGC AAGGCTAGTG TCCGTACCAG
AGATGGGTTA CGACGCCTTT TCCGCTGACG TGCCGAGAGG AGAGATTTGT
CTTAGAGGAA ATTCAATGTT TTCTGGTTAC CATAAAAGAC AAGATCTAAC
TGATCAAGTC CTAATCGATG GATGGTTCCA CACAGGAGAT ATTGGAGAAT
GGCAAGAAGA TGGATCAATG AAGATCATCG ATAGGAAGAA GAACATCTTC
AAGTTGTCTC AAGGTGAATA TGTTGCTGTT GAAAACCTCG AAAACACTTA
CTCAAGATGT CCCCTCATTG CTCAGATATG GGTCTATGGC AACAGCTTCG
AGTCATTTTT GGTAGGTGTG GTTGTACCTG ATAGAAAAGC TATTGAAGAT
TGGGCTAAAC TCAATTACCA ATCTCCCAAT GATTTCGAAT CTCTATGTCA
AAATCTCAAA GCTCAAAAAT ACTTCTTGGA TGAGCTTAAC TCTACCGCAA
AGCAATATCA ACTTAAAGGA TTTGAAATGT TAAAAGCTAT TCATTTAGAA
CCAAACCCTT TTGATATTGA AAGAGATCTT ATTACTCCAA CTTTCAAGCT
GAAAAGGCCA CAGCTCCTCC AACATTACAA GGGCATAGTT GATCAACTTT
ATTCAGAAGC AAAGAGGTCC ATGGCATAGA TAATTAGATA CCGATCGGCT
ATTCATTTTC TGATGCTATT TGGGTTTGTA TGATATGTTA CAAAATTGTG
TTCGGATCCT CTCATCATGT GATTCTTGTT ACACTAAATT TATAGTTTGG
AAACTATATA TATACTATTA AGCAACGTTT ACG

Gene models with high sequence identity

  1. AT1G49430.1 [+] show detail - long-chain acyl-CoA synthetase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam AMP-dependent synthetase/ligase 3.1e-102
Gene3D no description 5.6e-30
Gene3D no description 0.000018
Gene3D no description 3.5e-17
PatternScan AMP-binding, conserved site 0
HMMPanther LONG-CHAIN-FATTY-ACID COA LIGASE 6.3e-289
HMMPanther ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBE 6.3e-289
superfamily Acetyl-CoA synthetase-like 5.9e-117

See the detailed result >

AT1G49430.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 2
Curator Summary
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational Description
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-N23 introduced

  • F01618 - Specific phenotypes were NOT observed.
  • F19621 - Specific phenotypes were NOT observed.
  • F26425 - Specific phenotypes were NOT observed.
  • F27519 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found