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  3. RAFL05-02-N24

RAFL05-02-N24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00690)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-N24 - full reading 
TATCACAAGT CTGTTCCAAG TCTTATCCTT TCATCATCAT CATCACTTAC 
CTTCTTCACA GAGAGAGAGC TTCATCATCA TATGTAATGT GAGATGTCTC 
TTGAACAATG CAACAAGAAG CTCTCTCTTT CCTCTCGTCC TCTCTCCCTT 
CCCTTCACCA CAATTTTCCC TCTCTTTCTC GCCTCCGCTT CAACAATTTT 
CCCGCACTTT CCTTCAAACC AAACACTTCA TCATCATCTT CATCATTCTT 
CAAATCCCCA GATATACCCT CTCTCTCCTC CACCACAACA ACAACAACAA 
CCACCGAAAC CCTAGAATCC TCAATCCACG AGAAACTCAT TTACCTCGAT 
TCACTCGGAA TCGATTTCCT AACCCTAATC AACCGTCATC CACCTCTCCT 
CTCCACCGCT CTCTCCGCCG TTGAATCAGT CGTCGATTAC ATGACCACTC 
CACCAATAAA CTTCACTTTA CAAGACTTTC GCCGCCTCGT CTCAATGTGT 
CCAGAGCTTC TCACTTCACC TTTAACCTCA CACACAATCC CAGTCATCAC 
TTTCCTCCTC CGTGAAGTCG GCGTTGACTC TATCTTTGAC CTCCGTCAAG 
CTTTACGACG TCGTCCTCGT CTTCTCGCTT GTAGCGTCGA TCACCAGCTT 
AGACCAACGC TTTACTTTCT CCAGAGAATC GGAATCTTAG ATCCGCATAA 
ACATACGTAT CTTCTCTCTT GTAGCGTTGA CAATAAACTC GTACCACGGA 
TTGATTACTT CGAGAAGTTA GGATTCTCGC GGCGGAGCGC CACCGCGATG 
TTTAAGAGAT TCCCGCAGCT GTTTAATTAC AGTATTGCTG AGAATTATGA 
GCCGAAGTTG AAGTATTTGA TGGTGGAGAT GGGGAGAGAT GTTAGAGAGG 
TTCTTGAGTT TCCTCAGTAT TTCTCGTTTA GTTTGGAGAA TCGGATTAAA 
CCGAGACATG AAGCTTGTGC TGCGAAAGGT GTGAGGTTTC CATTGCCGGT 
GATGTTGAAG ACTAATGAAG CTGGTTTTAG AGATACATTG GAGGTATGTT 
GTGATTCTTC TCCGCCATTG AAGACCTCTC GCCTTGTTAC TGTACAAAAA 
GATTCTTGAT TTATAGAGTT TTGTGTGCTA GGAGAACATG GAAGCAAGTA 
CATTTTTGTA ATGAATGATG ATGAAGAACT CAATGAATGA AGAAACCAGC 
CTCTGCCTAC ATTTTGAGAC ACACACAGGG ATGGTGAGTT AAATCTTGAT 
AAGAGAAAGA ATGTTCATTT ACAATTCACG ATTCCGATGT ATTTCGGTCT 
AGTTATTGTT AGTGAACGAG AAATCAAGTG TATGTAAGTC CAGAAACCGT 
GTAGAGTTGC GATTTGCAGA GAATTGTGAT TCTACAATTG GAGCC

Gene models with high sequence identity

  1. AT2G36000.1 [+] show detail - Mitochondrial transcription termination factor family protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMSmart Mitochodrial transcription termination factor-related 0.047
HMMSmart Mitochodrial transcription termination factor-related 0.00069
HMMSmart Mitochodrial transcription termination factor-related 0.63
HMMSmart Mitochodrial transcription termination factor-related 6e-06
HMMSmart Mitochodrial transcription termination factor-related 0.0062
HMMPfam Mitochodrial transcription termination factor-related 6.4e-39

See the detailed result >

AT2G36000.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 810 Blast hits to 602 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 725; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-N24 introduced

  • F06038 - rosette leaf::decreased size / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in greater numbers in organism

Mutant lines with disrupted or induced

3 mutant lines found