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RAFL05-02-O13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87443)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-02-O13 - 5 prime EST 
GTACATAATC ATCTCACTCC TTTACTCACA CAAGAAAACA AAATCATGTC 
TCGATTTGCT ATCTTAGTAA CCTTGGCACT TGCCATTGCC ACTGTTTCGG 
TGGTTATAGC TCAAGTCCCT CCGGAGAAAC AATTCAGAGT CGTCAACGAA 
GGAGAATTCG GTGAATACAT CACTGAGTAC GACGCAAGTT ACAGATTCAT 
CGAATCATCA AACCAGAGCT TCTTCACATC ACCATTCCAG CTCTTGTTTT 
ACAACACTAC CCCTAGCGCC TACATCTTAG CTCTCCGAGT CGGACTCAGG 
CGTGACGAGT CTACCATGCG TTGGATATGG GACGCGAATC GCAACAACCC 
CGTCGGAGAA AACGCTACAC TCTCACTCGG CCGTAACGGC AACCTCGTCC 
TCGCTGAAGC TGACGGACGA GTCAAATGGC AGACTAACAC AGCTAACAAA 
GGCGTCACCG GATTCCAAAT CTTACCCAAC GGAAACATCG TCCTACACGA 
CAAAAACGGC AAATTCGTAT GGCAGAGTTT CGATCACCCC ACCGATACAC 
TCCTCACCGG CCAATCGTTA AAAGTTAACG GAGTCAACAA ACTCGTTAGC 
CGTACATCTG ATTCGAACGG CTCAGATGGT CCGTACAGCA TGGTGCTGGA 
CAAAAAANGN TTAACCNT

Gene models with high sequence identity

  1. AT1G78830.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
    E-value: 0; Score: 99.70

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-02-O13 - 3 prime EST 
GCTTCTCAAA GGTACTATAT ATATATAGTA AATACATCTG ATGGCTTTTT 
TTTAAGGTAA TACAATATAT TCAACAGGTG GATCATTACA AGCACACCGA 
TTATTCATTA AATCTCTAAG AATTCAAAAA GAATTCGGTA AATAACTTTC 
CCAAAAAAAC ACTAATATTT GATGTAAGCA ACAGAAGAAG TGTTGGCATC 
TTTGATAAGT GTACCAAGCA GAGGAGCAAG CAAACATTTC TTGTCTTTCT 
CTTTGTAGAA GTAACCCAAA CACTTGCAAT CACGATCGCA CTTGGCCTTG 
CAATCGTTCA CAGAAGTTGG GCCTTGTCCA TCATTAACAT AAGGCCCAGT 
AAAATGCTCA ACACCGACTA TCTTATAATA ATTGACAGTT TTACCCTTGA 
CTCCGCTGCA AAACTGCGTC GTTTTAGGTG GTGCGCATTT ATCACTCCAT 
CCGAGTAATC CTTTTGGTGT AGGACACGCG TTGCACATCC CACGATCGCA 
GTAACCGTAA TCGCCGCAAA ACGACGGCAA GCCACATTGA CGGACGAAGT 
AAGTGGAGAA GAATGAGAAA CTCTCTTCCC ATTTGAGATA CGTAGCTGCT 
GGGAAATACG AGTAAGCCTT GAGACTCCCG TCAGATCCGA GTCTTAGATA 
C

Gene models with high sequence identity

  1. AT1G78830.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
    E-value: 0; Score: 99.85

AT1G78830.1

Model type
Protein coding
Short Description
Curculin-like (mannose-binding) lectin family protein
Computational Description
Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78820.1); Has 2662 Blast hits to 2603 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-O13 introduced

  • F01231 - Specific phenotypes were NOT observed.
  • F04513 - Specific phenotypes were NOT observed.
  • F06547 - Specific phenotypes were NOT observed.
  • F11943 - seed::increased size / seed::increased length
  • F12637 - Specific phenotypes were NOT observed.
  • F18507 - Specific phenotypes were NOT observed.
  • F20347 - Specific phenotypes were NOT observed.
  • F21837 - seed::increased size / seed::increased length
  • F24843 - Specific phenotypes were NOT observed.
  • F26623 - Specific phenotypes were NOT observed.
  • F26915 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found