1. Home
  2. Full-length cDNAs
  3. RAFL05-02-P09

RAFL05-02-P09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00767)

full reading [+] show sequence

Nucleotide sequence: RAFL05-02-P09 - full reading 
ATCCAAAACG TTTTTCCTTC CCACAGGAAA AGAAGAAAAA CAGACAGCGG 
AGGACTAAAA CAACTAGCCA CAACACAACG CTTCAAATAT ATATTACTCT 
GCCACTTTCT TCAATCTTCC TTCAAAGATT CTTATTACAG CGACACACAA 
CTCTTTTCCA TTTAGATTTT TGATTTTTTT TGGTTCTCTA AAGGAGGAGA 
GAAATGTTGG CTATCTTCCA CGAGGCGTTT GCTCATCCGC CGGAGGAACT 
CAACAGTCCG GCATCTGAGA AATGCTCTAA ACAACCAAAA CTTCCAGAAG 
AAACCCTAAA TGATTTCTTA TTACGTTACC CTCTCAACAC TTTCTCCATG 
TCTTTCGGAC AAGCTGCTGT TCTTGCTTAC GTTCGTCCCT CTGCTTCCTT 
CTCCATCCAC CAGAGGTTGT TTTGTGGATT TGATGACATC TACTGTCTCT 
TCTTTGGGAG CTTGAACAAT CTGTGTCAGC TAAACAAACA GTATGGTCTC 
ACCAAGACAA CAAACGAGGC CATGTTTGTG ATCGAAGCTT ATAGGACTCT 
TAGAGACAGA GGTCCTTATC CAGCTGATCA GGTCGTCAAA GACTTAGACG 
GTAGCTTTTC CTTTGTGGTT TATGATAGCA AAGCCGGCTC TGTCTTCACT 
GCTCTGGGAT CTGATGGAGG GGTGAAGCTA TACTGGGGCA TAGCTGCTGA 
TGGATCTGTT GTTATATCAG ATGATTTGGA TGTTATCAAA GAGGGTTGTG 
CTAAATCTTT TGCTCCATTT CCTACAGGGT GTATGTTCCA TAGTGAAGGA 
GGGTTAATGA GCTTTGAGCA TCCAATGAAC AAGATCAAGG CGATGCCGAG 
GGTAGACAGT GAAGGAGTTC TATGCGGTGC CAACTTCAAG GTGGATGTGT 
ACAATCGTGT TAACAGTATC CCTCGTCGAG GAAGTGAAGC CAATTGGTCT 
CTCTGAATAC TTTTAATAAC ACTTTCAATT TGGTTTCTTT TTCGCACTTG 
TGCTTCTTCT CCGCTTTCAT CTTAGTTATG GACTGTTCCT AAGCTTGCCA 
TGAATAAAAC TGTGAATAAT AAAGCTTTTA ATGTTCTGTT TCTTACTTTA 
AGTCAGACAA TAAACTTTTA ACACTTGTGA TCAT

Gene models with high sequence identity

  1. AT4G27450.1 [+] show detail - Aluminium induced protein with YGL and LRDR motifs
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily N-terminal nucleophile aminohydrolases (Ntn h 1.1e-26
HMMPfam DUF3700 3.9e-51
HMMPfam DUF3711 2e-33
Gene3D no description 0.000000000012

See the detailed result >

AT4G27450.1

Model type
Protein coding
Short Description
Aluminium induced protein with YGL and LRDR motifs
Computational Description
Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G15450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-02-P09 introduced

  • F17525 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found