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RAFL05-03-A05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00849)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-A05 - full reading 
ATCTCACTTT GTTCATCTAA AAACTCCTCC TTTCATTTCC AAACAAAAAC 
TTCTTTTTAT TCTCACATCT TAAAGATCTC TCTCATGGCG ATGTCTTTCT 
CAGGAGCTGT TCTCACTGGT ATGGCTTCTT CTTTCCACAG CGGAGCCAAG 
CAGAGCAGCT TCGGCGCTGT CAGAGTCGGC CAGAAAACTC AGTTCGTCGT 
CGTTTCTCAA CGCAAGAAGT CGTTGATCTA CGCCGCTAAA GGTGACGGCA 
ACATCCTCGA TGACCTCAAT GAGGCCACAA AGAAAGCTTC AGATTTCGTG 
ACGGATAAAA CAAAAGAGGC ATTAGCAGAT GGTGAGAAAG CGAAAGACTA 
CGTTGTTGAA AAAAACAGTG AAACCGCAGA TACATTGGGT AAAGAAGCTG 
AGAAAGCTGC GGCGTATGTG GAGGAGAAAG GAAAAGAAGC CGCAAACAAG 
GCGGCAGAGT TCGCGGAGGG TAAAGCAGGA GAGGCTAAGG ATGCCACAAA 
GTAGGGTCTT ACCTAATCAG TTAATTTCAA GCACTTAAAC TCGTAGATAT 
ATTGATCCAT ATCCTCTCTC TTCATGTTTA ATAGTACTTA CAATAAGATG 
AGTCTGTTGT AATTTCTATT AATTTCACAT CACAACTGAA ATAAGATATG 
GTATCCACAG TCACCGTCAA AAACT

Gene models with high sequence identity

  1. AT2G42540.2 [+] show detail - cold-regulated 15a
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

See the detailed result >

AT2G42540.2

Model type
Protein coding
Short Description
cold-regulated 15a
Curator Summary
A cold-regulated gene whose product is targeted to the chloroplast. Cor15am protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. Late Embryogenesis abundant protein (LEA).
Computational Description
cold-regulated 15a (COR15A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated 15b (TAIR:AT2G42530.1); Has 189 Blast hits to 136 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 3; Fungi - 13; Plants - 155; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-A05 introduced

  • F13014 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::abnormal / stem::abnormal
  • F25725 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found