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RAFL05-03-B20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00797)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-B20 - full reading 
AACAAATTCC TACACCAATA TCTTTAGCTA GAGAGAAAAA AAGAGTGAGG 
AAACTAGAGA GAGAGACCAC CCAATAATGG TGAGGTTCGA GAAGGTTCAT 
TTAGTGTTAG GGTTAGCTCT GGTTCTAACT CTGGTCGGAG CTCCGACCAA 
AGCCCAAGGA CCTGTTTGCG GTGCAGGCCT GCCTGACAAA TTTAGCAGAT 
TAAACTTCCC TGAAGGCTTC ATTTGGGGAA CCGCAACAGC AGCATTTCAG 
GTTGAAGGAG CTGTTAATGA AGGTTGCAGA GGTCCAAGCA TGTGGGATAC 
TTTCACTAAG AAGTTCCCAC ATAGATGTGA AAATCATAAC GCTGATGTTG 
CTGTGGATTT CTATCATCGT TACAAGGAAG ATATCCAGTT GATGAAAGAC 
CTTAACACTG ATGCTTTTAG ACTTTCTATT GCGTGGCCCA GAATATTCCC 
CCATGGAAGG ATGTCTAAGG GAATAAGCAA AGTGGGAGTC CAATTCTACC 
ACGACCTCAT CGATGAGCTT CTCAAAAACA ATATAATACC ATTAGTTACA 
GTCTTTCATT GGGATACTCC CCAAGACTTG GAAGATGAAT ATGGTGGTTT 
CTTAAGTGGT CGCATCGTGC AAGATTTTAC CGAATATGCG AATTTCACTT 
TCCACGAATA TGGACACAAA GTGAAACATT GGATCACATT TAACGAGCCA 
TGGGTGTTTA GTCGTGCCGG TTACGACAAC GGAAAGAAAG CTCCGGGACG 
TTGTTCGCCG TACATCCCCG GTTATGGACA GCATTGTCAG GATGGGCGGT 
CTGGATACGA AGCTTATCAA GTCAGTCACA ACTTACTCTT GTCGCATGCT 
TACGCTGTTG ACGCATTCAG AAACTGCAAA CAGTGTGCTG GAGGTAAAAT 
TGGAATTGCA CACAGTCCAG CTTGGTTCGA ACCACAAGAC CTTGAGCATG 
TTGGAGGTTC CATTGAACGT GTGCTTGATT TCATCCTAGG ATGGCATTTG 
GCTCCAACAA CTTATGGAGA TTATCCACAA TCGATGAAGG ATCGTGTCGG 
TCATAGATTG CCAAAATTCA CAGAAGCTGA GAAGAAGTTG CTAAAGGGTT 
CTACAGATTA CGTAGGAATG AATTACTATA CTTCAGTGTT TGCAAAAGAA 
ATTAGCCCTG ATCCTAAGAG TCCGAGTTGG ACGACTGATT CTCTTGTTGA 
TTGGGATAGC AAGAGTGTGG ATGGATACAA AATTGGTAGC AAGCCGTTTA 
ATGGTAAACT GGATGTGTAT TCAAAAGGTT TGAGATACCT TTTGAAGTAT 
ATTAAGGATA ACTATGGCGA CCCAGAAGTT ATCATTGCCG AGAATGGATA 
CGGAGAAGAC CTTGGAGAGA AGCACAATGA CGTAAACTTT GGGACACAAG 
ATCACAACAG AAAATATTAT ATCCAAAGGC ATCTCTTGAG TATGCACGAC 
GCCATTTGCA AGGACAAAGT GAACGTTACG GGATACTTTG TGTGGTCTTT 
GATGGACAAC TTTGAGTGGC AAGATGGGTA CAAGGCGAGG TTCGGACTTT 
ACTACATCGA TTTCCAGAAC AACTTGACCC GTCACCAAAA AGTTTCGGGC 
AAATGGTATT CCGAATTCCT CAAACCACAG TTTCCAACCT CCAAGCTGAG 
GGAAGAACTC TAGATGATCA AGAATCCTAT CGGGACAAAA TAATTGAGTA 
CAAGAGTCTT GAAGATGTTG TTGAGGATAA TATCAGTTTG TGTGTTCTAT 
GGATCGTTTT CATCTACCGG TCCTTCCTAT GTTAGAAGGA CTTGTGAGTT 
GTTCGAGTTT TAATAATATC AATAAATGTC TTCTTTTTTA ATATATGTTG 
AGTTAATAAT TAAATCTGCT TATCGAAAAG AACAGATAAA ATAG

Gene models with high sequence identity

  1. AT1G52400.1 [+] show detail - beta glucosidase 18
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther BETA-GLUCOSIDASE 4.9e-304
HMMPanther Glycoside hydrolase, family 1 4.9e-304
superfamily Glycoside hydrolase, catalytic core 1.1e-164
Gene3D Glycoside hydrolase, subgroup, catalytic core 1e-160
FPrintScan Glycoside hydrolase, family 1 1.1e-21
FPrintScan Glycoside hydrolase, family 1 1.1e-21
FPrintScan Glycoside hydrolase, family 1 1.1e-21
FPrintScan Glycoside hydrolase, family 1 1.1e-21
FPrintScan Glycoside hydrolase, family 1 1.1e-21
PatternScan Glycoside hydrolase, family 1, active site 0
HMMPfam Glycoside hydrolase, family 1 3.6e-152

See the detailed result >

AT1G52400.1

Model type
Protein coding
Short Description
beta glucosidase 18
Curator Summary
encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formation
Computational Description
beta glucosidase 18 (BGLU18); FUNCTIONS IN: abscisic acid glucose ester beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, identical protein binding; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 19 (TAIR:AT3G21370.1); Has 11362 Blast hits to 11017 proteins in 1473 species: Archae - 142; Bacteria - 7866; Metazoa - 708; Fungi - 200; Plants - 1449; Viruses - 0; Other Eukaryotes - 997 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-B20 introduced

  • F01828 - seed::increased size / seed::increased length
  • F10916 - seed::increased length
  • F17423 - Specific phenotypes were NOT observed.
  • F19243 - Specific phenotypes were NOT observed.
  • F20121 - Specific phenotypes were NOT observed.
  • F21834 - Specific phenotypes were NOT observed.
  • F22713 - Specific phenotypes were NOT observed.
  • F29314 - Specific phenotypes were NOT observed.
  • F30012 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found