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  3. RAFL05-03-G07

RAFL05-03-G07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00798)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-G07 - full reading 
AAAAAACCAA CATAAAACAC AACCCAAAAA TGGAGTTACT AACGACGGTC 
GCGAGCTTTT TCACTCCGAC GACTCTTTTC CTCCTTCTTA ATCTTATGAT 
CGGTACAATC GTCGTAACCT CTCGACTCGG GTCAGGTTCA AGAAAACATT 
ACCAGCATCA CGATGGATTC GGGTCAGGTC ATGCTCCGGC TCCGTTAGCT 
AGAGCTCCAT CGATTATCGA CCGAGTCAAG TCCATCAATT TTCATCTCTA 
CAAATTTCCT CATCCAGAAA CTGAGCTTTT CTCGATGACA GCTCACCACG 
ACATAATCGG GTCGGATCTT CATGTTTACC CGGATCCAAA TCCGGCTCCG 
TTACAACGTG CTCCTTCTCT TTTGGATCGG GTCAAATCTA TCAACATGTC 
TTATTTCAAG TTCCCACACG ACGTAACCGG GTCGGATCCT CACTCCCACT 
CCCACTCCCA CCTAGATTTA CACCCGGATC CGGCTCCGGC ACCGTTACAA 
CGAGCTCCTT CTCTTCTGGA TCGGGTCAAA TCCATCAACA TGTCATACTT 
CAAATTCCAG CAGTATAACC CGGAGGAGAA TGATTATGCT CATCACACAG 
AACCGACCCG ATTCGAAAGT ATTCCGACCC GGATGGGTCG GGTTGACCCG 
ATTGATATCT CAAAATTCAG AATCCCGGAA GAAGATCAAC CAACCGGAAC 
CGGAGTGAAC AGTCAAATTA ACCCGCCCGG TTTAACTCGA GCTCCGTCTA 
TCTTAGAACG GGTCAAATCC ATTAAGCTAT CCTCCTTCTA CAGATCCGAC 
CCGGATTTGG ATCAAAAACA AAATCCGGAT CCGGTTCTTC ACGAGGAGCA 
CAAGCATGTA CGAAGCAGAT CGGAATCGAA AAAACCGGTG AAGAAGAAGA 
AGAAAGCTTT AACGAAGATG ACAAAATCGG CTAGCGAGAA ATCAGGTTTT 
GGTTTCGCAG GAAGCCATGC GGAAGCGCCG GAGACGGTGG AATCCCTCGA 
ACGGAGAAGA CCAGATACAA CGAGAGTCGA AAGATCGACG TCTTTCGGCG 
ACGGCGAAGA TGGCGTCGAC GCGAAAGCTT CAGATTTCAT CAACAAATTC 
AAACAGCAGC TGAAATTACA GAGACTCGAT TCGATTCTGA GGTACAAGGA 
GATGCTTAAG GCCCATTGAA GCCGTCTCCG TCGCCGGTGA TTATTGTATT 
CCTCGCCGAT GTCTGGCTCG CGGTTTTGTT TGCCGCCGTT TTTCACGTAG 
GAGACAGGAG TGGACATTAT CTGAATTACC GATAATATCC CTGTATGTTT 
GAGGATATTT AAGTAATTTA TTAATTAGTT AATGTGAATT TGTTATTGTT 
TAGTTCATAA AGAGACAAGA AAGAAAAAAA CGTAGTTGCT TAGCGAAGTA 
TGTGTGGCGT TAAAATTGGA TCTAGGACGT TGTTTTGCGT CTTAATTCTA 
ATGATCATTC ATTCACTTGG CAATTTTTTC GAGATGTTTG GTACACGTTT 
CCTATTTTCT GCCCTATTTT CAGGTTGGTT TATTCTATTT ATTTAAAATT 
TTCTAGGCAA AATTGTTCGT GCCATGATAC AGATTATATT AAGAGTTCTA 
TTTGAATATT TTTGTACATA TACAGATATA CTTCCTATTT TGTATCATAT 
ATACTTTTAG ACT

Gene models with high sequence identity

  1. AT5G56980.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

See the detailed result >

AT5G56980.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-G07 introduced

  • F21325 - rosette leaf::abnormal

Mutant lines with disrupted or induced

5 mutant lines found